View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17773_low_5 (Length: 317)
Name: NF17773_low_5
Description: NF17773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17773_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 26887354 - 26887069
Alignment:
| Q |
18 |
ctacattttgctctttgatccttccaccattagaatcaagcctttcttcgtgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatg |
117 |
Q |
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| T |
26887354 |
ctacattttgctctttgatccttccaccattagaatcaagtctttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatg |
26887255 |
T |
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| Q |
118 |
acatttcttttccatggccttcttatctgtacttttcacatcctcagcattagagactgcaggtttcaaatacttctccaaaattgttcttgagctgcaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26887254 |
acatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttcttgagctgcaa |
26887155 |
T |
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| Q |
218 |
gttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaatt |
303 |
Q |
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| T |
26887154 |
gttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaatt |
26887069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 51855070 - 51855355
Alignment:
| Q |
18 |
ctacattttgctctttgatccttccaccattagaatcaagcctttcttcgtgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatg |
117 |
Q |
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| T |
51855070 |
ctacattttgctctttgatccttccaccattagaatcaagtctttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatg |
51855169 |
T |
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| Q |
118 |
acatttcttttccatggccttcttatctgtacttttcacatcctcagcattagagactgcaggtttcaaatacttctccaaaattgttcttgagctgcaa |
217 |
Q |
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| T |
51855170 |
acatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttatccaaaattgttcttgagctgcaa |
51855269 |
T |
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| Q |
218 |
gttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaatt |
303 |
Q |
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| T |
51855270 |
gttaagataaaaacaaaagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaatt |
51855355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 45 - 303
Target Start/End: Complemental strand, 35043384 - 35043126
Alignment:
| Q |
45 |
cattagaatcaagcctttcttcgtgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatgacatttcttttccatggccttcttatc |
144 |
Q |
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| T |
35043384 |
cattagaattaagtctttcttcatggctcctaaatagagcatcagtatagtgtgcaagatgaaaatgagtttgacatttcttttccatggccttcttatc |
35043285 |
T |
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| Q |
145 |
tgtacttttcacatcctcagcattagagactgcaggtttcaaatacttctccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatg |
244 |
Q |
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| T |
35043284 |
tgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttctccaaaattgttcttgagctgcaagttaagataaaaacaggagaagacatg |
35043185 |
T |
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| Q |
245 |
aactcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaatt |
303 |
Q |
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| T |
35043184 |
aactcaaatgagtcaggcatcacaagggagcatccattatttaaacattaaacagaatt |
35043126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 8944305 - 8944590
Alignment:
| Q |
18 |
ctacattttgctctttgatccttccaccattagaatcaagcctttcttcgtgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944305 |
ctacattttgctctttgatccttccaccattagaatcaagtatttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatt |
8944404 |
T |
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| Q |
118 |
acatttcttttccatggccttcttatctgtacttttcacatcctcagcattagagactgcaggtttcaaatacttctccaaaattgttcttgagctgcaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8944405 |
acatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagaaactgtaggtttcaaatacttctccaaaattgttcttgagctgcaa |
8944504 |
T |
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| Q |
218 |
gttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattgaaacattaaacagaatt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
8944505 |
gttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaggggagcatccattatttaaacattaaacagaatt |
8944590 |
T |
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