View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17774_low_1 (Length: 514)
Name: NF17774_low_1
Description: NF17774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17774_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 11 - 490
Target Start/End: Original strand, 37555729 - 37556209
Alignment:
| Q |
11 |
caaagggtcctcagcagtatgattggtcagcttataggtccttgtttcagcttgttcaggattgcaaacttaagttacaagctataatgtcatttcatca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37555729 |
caaagggtcctcagcagtatgattggtcagcttataggtccttgtttcagcttgttcaggattgcaaacttaagttacaagctataatgtcatttcatca |
37555828 |
T |
|
| Q |
111 |
atgtggagggaatattggagattctgtttccattccattacctaaatgggtacttgaagttggtgaatcaaatcctgatatcttttacatcaacagttca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
37555829 |
atgtggagggaatattggagattctgtttccattccattacctaaatgggtacttgaagttggtgaatcaaatcctgatatcttttacaccaatagttca |
37555928 |
T |
|
| Q |
211 |
ggtttcatgaataaagaatgtatttcactgggtgtggataataaacctttctttaatggaagaactcccattcaggttagctatttatagttaat-gaat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37555929 |
ggtttcatgaataaagaatgtatttcactgggtgtggataataaacctttctttaatggaagaactcccattcaggttagctatttatagttaatggaat |
37556028 |
T |
|
| Q |
310 |
tcaactctgtgtgttacttgataactcaagtttaaccaaactctacatgtacgtttgacaaagtttattgaaaatggtttgcaagtgcagccgcatttga |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |
|
|
| T |
37556029 |
tcaactctgtgtgttacttgataactcaagtttaaccaaactctacatgtacgtttgacaaagtttattgaaaatggtttgcaagcgcaactgcatttga |
37556128 |
T |
|
| Q |
410 |
ggtcctgatgtcaaggtttttgatgtgtttgtgaccgctttgcaacctcaattgcagtctcatcagtcgtatttgacagaa |
490 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37556129 |
ggtcctgatgtcaaggtttttgatgtgtctgtgaccgctttgcaacctcaattgcagtctcatcagtcgtatttgacagaa |
37556209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 15502543 - 15502654
Alignment:
| Q |
88 |
caagctataatgtcatttcatcaatgtggagggaatattggagattctgtttccattccattacctaaatgggtacttgaagttggtgaatcaaatcctg |
187 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||| | || ||| |||| ||| ||||| || |||||||||||||| |||| |||||| |||||| |
|
|
| T |
15502543 |
caagctatcatgtcattccatcaatgtggaggaaatgtaggtgatgttgttaacatcccattgccaaaatgggtacttgacattggagaatcagatcctg |
15502642 |
T |
|
| Q |
188 |
atatcttttaca |
199 |
Q |
| |
|
||||||| |||| |
|
|
| T |
15502643 |
atatcttctaca |
15502654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University