View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17774_low_3 (Length: 374)
Name: NF17774_low_3
Description: NF17774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17774_low_3 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 15885964 - 15885621
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15885964 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtcca |
15885865 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
15885864 |
atactttggatctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctctt |
15885765 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattcctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15885764 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattcctt |
15885665 |
T |
|
| Q |
314 |
ttgtgttgaatatttctcttacctcatcttgtgctttcttcatc |
357 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
15885664 |
ttgtgttgaacatttctcttacttcatcttgtgctttcttcatc |
15885621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 12609903 - 12610246
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
12609903 |
ttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtcca |
12610002 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| || | |||||||||||||||||||| ||||||||||| |
|
|
| T |
12610003 |
gtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctctt |
12610102 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattcctt |
313 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | || || ||||| |||||| |
|
|
| T |
12610103 |
ggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctt |
12610202 |
T |
|
| Q |
314 |
ttgtgttgaatatttctcttacctcatcttgtgctttcttcatc |
357 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12610203 |
tcatgttgaatatatctcttacctcatcttgtgctttcttcatc |
12610246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 12636999 - 12637339
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
12636999 |
ttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtcca |
12637098 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
|||||||||||||| ||||| | ||| ||||| | ||| ||||| |||||| |||||||||| | || ||||| ||||||||||| |||||||||| |
|
|
| T |
12637099 |
gtactttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct- |
12637197 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattcctt |
313 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||| ||| ||||| |||||||| ||||||||| |||||| |
|
|
| T |
12637198 |
--aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagttcctt |
12637295 |
T |
|
| Q |
314 |
ttgtgttgaatatttctcttacctcatcttgtgctttcttcatc |
357 |
Q |
| |
|
| |||||||||||| ||| || |||| |||||||||||||||| |
|
|
| T |
12637296 |
tcttgttgaatatttttctcacttcatattgtgctttcttcatc |
12637339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 357
Target Start/End: Original strand, 62154 - 62494
Alignment:
| Q |
17 |
ttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtccaata |
116 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
62154 |
ttccagcaccaaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagta |
62253 |
T |
|
| Q |
117 |
ctttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctc-acattctcttgg |
215 |
Q |
| |
|
| ||||||||||||| || ||||| ||||| | ||| | ||| |||| |||||||||||| | ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
62254 |
ccttggatctcttccgattgcccatgcattaactatcagctttgttttcattggtatatgatacccatcaatctcacatgctt-ctctacattctcttgg |
62352 |
T |
|
| Q |
216 |
aagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattcctttt |
315 |
Q |
| |
|
||||||||||| | |||| ||||||||||| | |||||||||||||| |||||||| || |||| |||| ||| | | ||| ||| | ||| || |
|
|
| T |
62353 |
aagtaaaagagcacctggggggtgtaacctcagggtctctttcacaattgacttcacgtatttgagttcatgcatacaactttcatcaaaagctcccttc |
62452 |
T |
|
| Q |
316 |
gtgttgaatatttctcttacctcatcttgtgctttcttcatc |
357 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||||||||| |
|
|
| T |
62453 |
atgttgtatatttctctcacttcatcttgtgctttcttcatc |
62494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 6756 - 6489
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6756 |
ttcttccagcaccaaaaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtcca |
6657 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
| |||||||||||| |||| ||||| ||||||||||| ||||| || | | ||||| | | |||||| ||||||||||||| ||||||||||| |
|
|
| T |
6656 |
gaagtttggatctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataaccatttatctcacatgctttaccacattctctt |
6557 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgag |
281 |
Q |
| |
|
|| || |||||||| ||||||||||||||||| | ||| ||||| || ||||| ||||||||| |||| |
|
|
| T |
6556 |
ggtagcaaaagaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgag |
6489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 21779811 - 21780153
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||| | |||||| |||||||||||||||||| |||||||| |||||||| |||| | ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
21779811 |
ttcttccggcaccaaatggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtcca |
21779910 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
|| |||||||||||| |||| ||||| ||||||||||| ||||| | || || || || || |||||| || ||||||||||| ||||||||| |
|
|
| T |
21779911 |
gtagtttggatctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaaccatttatatcacatgcttgactacattctctc |
21780010 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattcctt |
313 |
Q |
| |
|
|| | |||||||| ||||||||||||| ||||||||| ||||| |||||||| ||||||||| |||| ||||| || | || ||| |||| |||||| |
|
|
| T |
21780011 |
ggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
21780110 |
T |
|
| Q |
314 |
ttgtgttgaatatttctcttacctcatcttgtgctttcttcat |
356 |
Q |
| |
|
| | ||||| | |||||| || |||||||||||||||||||| |
|
|
| T |
21780111 |
tcattttgaaaacttctctcacttcatcttgtgctttcttcat |
21780153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 12438302 - 12438434
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||||| ||||||||| || |||| |||||| |||||| || ||||| | | | |||| |||||||| |||| |||| | ||| ||| |||| |
|
|
| T |
12438302 |
ttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacaatcaataaatctctcaggattaaacttttctccttcattcca |
12438401 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcatt |
146 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
12438402 |
atactttgggtctcttccaattgcccatgcatt |
12438434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 23039039 - 23039381
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||| | |||||||||||||| | ||| ||| |||||||||||||||||| ||||| || |||||||| |
|
|
| T |
23039039 |
ttcttccggcaccaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtcca |
23039138 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
|| |||||||||||| |||| ||||| ||||||| ||| ||||| || || || ||||| ||| |||||| |||||||||| ||| |||||||||| |
|
|
| T |
23039139 |
gtaatttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctctt |
23039238 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattcctt |
313 |
Q |
| |
|
|| || |||||||| | ||||||||||||||| | ||| ||||| |||||||||||||||||| |||| ||||| || | || ||| |||| |||||| |
|
|
| T |
23039239 |
ggcagcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
23039338 |
T |
|
| Q |
314 |
ttgtgttgaatatttctcttacctcatcttgtgctttcttcat |
356 |
Q |
| |
|
| | ||||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
23039339 |
tcattttgaaaacctctctcacctcatcttgcgctttcttcat |
23039381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 23145918 - 23146260
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23145918 |
ttcttccagcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtcca |
23146017 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
|| |||||||||||| ||| ||||| ||||||| || ||||| | || || ||||| ||| |||||| || |||||| |||| ||||||||| |
|
|
| T |
23146018 |
gtagtttggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataaccatttatatcacattcttgactacattctctc |
23146117 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattcctt |
313 |
Q |
| |
|
|| | |||||||| ||||||||||||| ||||||||| ||||| |||||| | ||||||||| |||| ||||| || | || ||| |||| |||||| |
|
|
| T |
23146118 |
ggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctt |
23146217 |
T |
|
| Q |
314 |
ttgtgttgaatatttctcttacctcatcttgtgctttcttcat |
356 |
Q |
| |
|
| | ||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
23146218 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcat |
23146260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 23036168 - 23036510
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||| ||||||| |||||||||| ||| | ||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
23036168 |
ttcttccggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtcca |
23036267 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
|| |||||||||||| |||| ||||| ||||| ||| ||||||| || || || ||||| ||| |||||| ||| |||||||||| |||| |||||| |
|
|
| T |
23036268 |
gtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctctt |
23036367 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattcctt |
313 |
Q |
| |
|
|| || |||||||| | ||||||||||||||| | ||| ||||| || ||||| ||||||||| |||| || || ||| | ||||| | || |||||| |
|
|
| T |
23036368 |
ggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttgatacaattctcttcgacccttcctt |
23036467 |
T |
|
| Q |
314 |
ttgtgttgaatatttctcttacctcatcttgtgctttcttcat |
356 |
Q |
| |
|
| | ||||| | ||||| |||||| |||||||||||||||| |
|
|
| T |
23036468 |
tcattttgaaaacctctctcacctcagcttgtgctttcttcat |
23036510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 23148756 - 23149098
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||| | |||||||||||||||||| || ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23148756 |
ttcttccggcaccaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtcca |
23148855 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
|| |||| ||||||| |||| ||||| ||||||||||| || || | || || || || ||| |||||| || ||||| ||||| ||||||||| |
|
|
| T |
23148856 |
gtagtttgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccatttatatcacacgcttgactacattctctc |
23148955 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattcctt |
313 |
Q |
| |
|
|| | |||||||| || |||||||||| ||||||||| ||||| |||||| | ||||||||| |||| ||||| || | || ||| |||| |||||| |
|
|
| T |
23148956 |
ggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctt |
23149055 |
T |
|
| Q |
314 |
ttgtgttgaatatttctcttacctcatcttgtgctttcttcat |
356 |
Q |
| |
|
| | ||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
23149056 |
tcattttgaaaacctctctcacctcatcttgtgctttcttcat |
23149098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 356
Target Start/End: Original strand, 23024280 - 23024612
Alignment:
| Q |
24 |
accaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtccaatactttgga |
123 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||| || ||||| || |||||| |
|
|
| T |
23024280 |
accaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatttgga |
23024379 |
T |
|
| Q |
124 |
tctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctcttggaagtaaaa |
223 |
Q |
| |
|
|||||| |||| ||||| ||||||| ||| ||||| | || |||| || | | |||| || |||| ||||| ||| |||||||||| || | ||||| |
|
|
| T |
23024380 |
tctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcataaccgtctatcttacatgattgagcacattctctcggtattaaaa |
23024479 |
T |
|
| Q |
224 |
gaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattccttttgtgttgaa |
323 |
Q |
| |
|
| || || |||||||||||||| | ||| ||||| |||| ||| ||||||||| | || ||||| ||| | ||||| |||| ||||||| | ||||| |
|
|
| T |
23024480 |
gtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattgatacaattctcttcaacccttcctttcatattgaa |
23024579 |
T |
|
| Q |
324 |
tatttctcttacctcatcttgtgctttcttcat |
356 |
Q |
| |
|
|| |||| |||||| |||||||||||||||| |
|
|
| T |
23024580 |
aatctctcgcacctcagcttgtgctttcttcat |
23024612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 22971949 - 22972174
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| | ||||| | |||| ||| ||| |||| ||||| || ||||||||| | ||||| |||||||| |
|
|
| T |
22971949 |
ttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatcagtcca |
22972048 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
||| |||||||| |||||||| ||||| ||||||||||| ||| | |||||||||||||| ||| |||||||||||||||| ||||| |||| | ||| |
|
|
| T |
22972049 |
atattttggatcccttccaattgcccaagcattgattatcaccctacttttgattggtatgtgataaccatcaatctcacaagcttgtccacacaccctt |
22972148 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtg |
239 |
Q |
| |
|
|| | |||||||||| | |||||||| |
|
|
| T |
22972149 |
ggtactaaaagaggaccaggagggtg |
22972174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 23017060 - 23017333
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
|||||||| ||||||||||||||| || || ||| ||||||||||||||||| | | ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
23017060 |
ttcttccaccaccaaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaatctctctggataaaacttctctggttcagtcca |
23017159 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
|| |||||||||||| | || ||||| ||||| ||||| ||||| | || | |||||| ||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
23017160 |
gtagtttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctctt |
23017259 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcatt |
287 |
Q |
| |
|
|| || |||||||| ||| ||| ||||| || | ||| ||||| |||||||| |||| |||| |||| ||||| |
|
|
| T |
23017260 |
ggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcatt |
23017333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 276
Target Start/End: Original strand, 23140054 - 23140306
Alignment:
| Q |
24 |
accaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtccaatactttgga |
123 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||| | | || |||||||||||||||||||| ||||||| |||||||| || |||||| |
|
|
| T |
23140054 |
accaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttgga |
23140153 |
T |
|
| Q |
124 |
tctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctcttggaagtaaaa |
223 |
Q |
| |
|
||||| | || ||||| ||||||| | ||||| | || | |||||| ||| |||||| |||||||||||||| |||| |||||||| || |||| |
|
|
| T |
23140154 |
tctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgataaccatgtatctcacatgcttgaccacactctcttggtagcaaaa |
23140253 |
T |
|
| Q |
224 |
gaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataa |
276 |
Q |
| |
|
|||| | |||| ||||||||| ||||| ||||| || | ||| ||||||||| |
|
|
| T |
23140254 |
gaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataa |
23140306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 22946412 - 22946588
Alignment:
| Q |
24 |
accaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtccaatactttgga |
123 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||| | |||| ||| ||| |||| ||||| || ||||||||| | ||||| ||||||||||| |||||| |
|
|
| T |
22946412 |
accaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttgga |
22946511 |
T |
|
| Q |
124 |
tctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttg |
200 |
Q |
| |
|
|| |||||||| ||||| ||||||||||| ||| | || ||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
22946512 |
tcccttccaattgcccaagcattgattatcaccctactattgattggtatgtgataaccatcaatctcacatgcttg |
22946588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 22831833 - 22832082
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||||||| || |||||||| | | | ||| |||||||||| || |||||||| || |||||||| ||| |
|
|
| T |
22831833 |
ttctaccagcaccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtccca |
22831932 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||| | ||| || |||||||| | ||||||| | | |||| ||||||||||||| ||||||||||| |
|
|
| T |
22831933 |
atgatttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctctt |
22832032 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaac |
263 |
Q |
| |
|
||||| |||| | | ||||||||||| || || |||||||||||||| |
|
|
| T |
22832033 |
ggaagcaaaaatgttgacggagggtgtaatctcaatgtctctttcacaac |
22832082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 281
Target Start/End: Original strand, 23032780 - 23032964
Alignment:
| Q |
97 |
ctctctgggtcagtccaatactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatg |
196 |
Q |
| |
|
|||||||| |||||||| || |||||||||||| |||| ||||| ||||||| ||| ||||| ||||| |||||||| ||| |||||| |||||||||| |
|
|
| T |
23032780 |
ctctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatg |
23032879 |
T |
|
| Q |
197 |
cttgctcacattctcttggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgag |
281 |
Q |
| |
|
|||| | ||||||||||| || |||||||| ||| |||||| ||||| | ||| ||||| || ||||| ||||||||| |||| |
|
|
| T |
23032880 |
cttgaccgcattctcttggtagcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgag |
23032964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 22941576 - 22941327
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||| || ||||| || | | | || |||| || || || |||||||| |||||||||||| ||| |
|
|
| T |
22941576 |
ttcttccagcaccaaatggaatgaactcaaaattatttcccttataatctacacaactttcaataaacctttcaggataaaatctctctgggtcatccca |
22941477 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||| | ||| || |||||||| | ||||||| | | |||| || ||||||||||| ||||||||||| |
|
|
| T |
22941476 |
atgatttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatttcacatgcttgtccacattctctt |
22941377 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaac |
263 |
Q |
| |
|
||||| |||| | ||| |||||||| || || || |||||||||||||| |
|
|
| T |
22941376 |
ggaagcaaaaatgcagcaggagggtgcaatctcaatgtctctttcacaac |
22941327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 22986277 - 22986407
Alignment:
| Q |
16 |
cttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtccaat |
115 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| | ||||| | |||||||| ||| |||| || ||||| ||||||||| | || |||||| |||||| |
|
|
| T |
22986277 |
cttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatcggggtcattccaat |
22986376 |
T |
|
| Q |
116 |
actttggatctcttccaatcgcccacgcatt |
146 |
Q |
| |
|
| || ||||| | |||||| ||||| ||||| |
|
|
| T |
22986377 |
atttaggatcccgtccaatggcccaagcatt |
22986407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 23032712 - 23032765
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatag |
67 |
Q |
| |
|
||||||| | |||||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
23032712 |
ttcttccggcaccaaagggaatgtactcaaaattacttcctttatagtcaatag |
23032765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 5594232 - 5593983
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtcca |
113 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||||||| || |||||||| | | | ||| |||||||||| || |||||||| || |||||||| ||| |
|
|
| T |
5594232 |
ttctaccagcaccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtccca |
5594133 |
T |
|
| Q |
114 |
atactttggatctcttccaatcgcccacgcattgattattaccttgcttttgattggtatatgaaaaccatcaatctcacatgcttgctcacattctctt |
213 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||| | ||| || |||||||| | ||||||| | | |||| ||||||||||||| ||||||||||| |
|
|
| T |
5594132 |
atgatttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctctt |
5594033 |
T |
|
| Q |
214 |
ggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaac |
263 |
Q |
| |
|
||||| |||| | | ||||||||||| || || |||||||||||||| |
|
|
| T |
5594032 |
ggaagcaaaaatgttgacggagggtgtaatctcaatgtctctttcacaac |
5593983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 23610220 - 23610352
Alignment:
| Q |
19 |
ccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctgggtcagtccaatact |
118 |
Q |
| |
|
|||| |||||| |||||| ||||||||||| | ||| | |||||||||||| |||| || || || ||||||||| | ||||||||| ||||||| | |
|
|
| T |
23610220 |
ccagcaccaaatggaatgaactcaaaattagttcctgagaaatcaatagagctatcaataaacctttcaggataaaacttatctgggtcattccaatatt |
23610319 |
T |
|
| Q |
119 |
ttggatctcttccaatcgcccacgcattgatta |
151 |
Q |
| |
|
| ||||| ||||| || ||||| ||||| |||| |
|
|
| T |
23610320 |
taggatcccttcctattgcccaagcatttatta |
23610352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 41305347 - 41305310
Alignment:
| Q |
111 |
ccaatactttggatctcttccaatcgcccacgcattga |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41305347 |
ccaatactttggatctcttccaatcgcccaagcattga |
41305310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 41465847 - 41465811
Alignment:
| Q |
110 |
tccaatactttggatctcttccaatcgcccacgcatt |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41465847 |
tccaatactttggatctcttccaatcgcccatgcatt |
41465811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 7154535 - 7154493
Alignment:
| Q |
14 |
ttcttccagaaccaaaaggaatgtactcaaaattattcccttt |
56 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| ||||| |
|
|
| T |
7154535 |
ttcttccagcaccaaaaggaatatactcaaaattatttccttt |
7154493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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