View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17774_low_4 (Length: 345)

Name: NF17774_low_4
Description: NF17774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17774_low_4
NF17774_low_4
[»] chr4 (28 HSPs)
chr4 (4-285)||(7878809-7879090)
chr4 (1-316)||(7908725-7909042)
chr4 (43-299)||(7779272-7779525)
chr4 (57-301)||(7773121-7773368)
chr4 (1-206)||(7771818-7772020)
chr4 (5-206)||(7790507-7790705)
chr4 (23-252)||(7786945-7787170)
chr4 (22-316)||(7237068-7237360)
chr4 (23-206)||(7766123-7766303)
chr4 (25-272)||(7905010-7905269)
chr4 (1-75)||(7773389-7773463)
chr4 (37-116)||(48903411-48903490)
chr4 (46-234)||(7801108-7801295)
chr4 (38-116)||(45343487-45343565)
chr4 (46-234)||(7823440-7823627)
chr4 (43-122)||(45384407-45384486)
chr4 (171-326)||(48871156-48871315)
chr4 (171-326)||(48876460-48876619)
chr4 (171-326)||(48886842-48887001)
chr4 (43-133)||(45365726-45365816)
chr4 (171-236)||(45384291-45384355)
chr4 (45-114)||(48734936-48735005)
chr4 (171-254)||(50669678-50669760)
chr4 (262-312)||(45371393-45371443)
chr4 (263-316)||(7790764-7790817)
chr4 (46-216)||(7813948-7814118)
chr4 (171-236)||(45365621-45365685)
chr4 (171-216)||(48903548-48903593)
[»] chr7 (1 HSPs)
chr7 (45-127)||(48884291-48884376)
[»] chr2 (1 HSPs)
chr2 (171-254)||(29351018-29351100)
[»] chr5 (2 HSPs)
chr5 (171-307)||(9120359-9120500)
chr5 (45-110)||(42561865-42561930)
[»] chr3 (2 HSPs)
chr3 (43-133)||(47451406-47451496)
chr3 (171-326)||(11014808-11014959)
[»] chr8 (5 HSPs)
chr8 (34-114)||(12200795-12200875)
chr8 (34-114)||(12445223-12445303)
chr8 (171-236)||(4030189-4030253)
chr8 (43-116)||(4030311-4030384)
chr8 (37-69)||(4962089-4962121)
[»] chr6 (2 HSPs)
chr6 (38-125)||(21979157-21979244)
chr6 (171-203)||(21979076-21979108)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 7878809 - 7879090
Alignment:
Q  4 gttgatgccattcgtgaccactactttcgacctatatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatg 103  Q
    ||||||| ||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7878809 gttgatgtcattcctgatcactactttcaacctatatattctacagaaaatggtgatattattggaagaaatcatggtactagattggtgaagtataatg 7878908  T
Q  104 ataaaggacagttattaaggcatcgatccttctgtaatagtccatcagaagttgtaatgtatgaagaagagtctctactttcac------tccctggtga 197  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| | |  ||||||||||||||||      ||||||||||    
T  7878909 ataaaggacagttattaaggcatcgctccttctgtaatagtccatccgaagttgtcatgtat-acg--gagtctctactttcactccctgtccctggtga 7879005  T
Q  198 caatgagcaaatttaagaaagatcacacaaacaagaagaccgaggttgtgaaatattttcgaccattttcttcatatttatggttatg 285  Q
    ||| |||||| ||||||||||||||||||||||||||||||||    |||||||||| || |||||||||||||||||||| ||||||    
T  7879006 caacgagcaagtttaagaaagatcacacaaacaagaagaccga---cgtgaaatattctcaaccattttcttcatatttatagttatg 7879090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 7908725 - 7909042
Alignment:
Q  1 tctgttgatgccattcgtgaccactactttcgacctatatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtata 100  Q
    |||||||||||||||| ||| ||||||||||  |||||| | ||||||||||| |||||||||||||||| || || |  | | ||||||||||||||||    
T  7908725 tctgttgatgccattcctgatcactactttcaccctatacactctacaaaaaacggtgatattattggaagaactcttaattccagattggtgaagtata 7908824  T
Q  101 atgataaaggacagttattaaggcatcgatccttctgtaatagtccatcagaagttgtaatgtatgaagaagagtctctactttcactccctggtgacaa 200  Q
    |||||||||||||| |||||||||||||  |||||| |||||||||||| |||||||| ||||||      |||||||| ||||||||||||||||||||    
T  7908825 atgataaaggacagctattaaggcatcgcaccttctttaatagtccatccgaagttgtcatgtat---accgagtctctgctttcactccctggtgacaa 7908921  T
Q  201 tgagcaaatttaagaaagatcacacaaacaag-----aagaccgaggttgtgaaatattttcgaccattttcttcatatttatggttatgttgtattatg 295  Q
    ||||||| ||||||||||||||||||| ||||     ||||| |||||||||||||||| || || |||||||||||||||||  |||| ||||||| ||    
T  7908922 tgagcaagtttaagaaagatcacacaatcaagaagacaagactgaggttgtgaaatattctcaacgattttcttcatatttataattatattgtattttg 7909021  T
Q  296 aactcttgggtggctgcattt 316  Q
    ||||||||||||| |||||||    
T  7909022 aactcttgggtggttgcattt 7909042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 43 - 299
Target Start/End: Complemental strand, 7779525 - 7779272
Alignment:
Q  43 tctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaaggcatcgatccttctgtaata 142  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||    
T  7779525 tctacaaaaaatggtgatattattggaggaaatcttggtactagattggtgaagtataatgatgaaggacagctattaaggcatcgctccttctgtaata 7779426  T
Q  143 gtccatcagaagttgtaatgtatgaagaagagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaagaccgagg 242  Q
    ||||||  |||||||| |||||| | |  |||||||| ||||| |||||| ||||||||  |||| ||||| ||||||  ||||||||||||||||||||    
T  7779425 gtccattcgaagttgtcatgtat-acg--gagtctctgctttcgctccctagtgacaatccgcaagtttaataaagattgcacaaacaagaagaccgagg 7779329  T
Q  243 ttgtgaaatattttcgaccattttcttcatatttatggttatgttgtattatgaact 299  Q
    ||||| |||||| || ||||||||||||||| ||||  |||| ||||||||||||||    
T  7779328 ttgtggaatattctcaaccattttcttcataattataattatattgtattatgaact 7779272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 57 - 301
Target Start/End: Complemental strand, 7773368 - 7773121
Alignment:
Q  57 tgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaaggcatcgatccttctgtaatagtccatcagaagtt 156  Q
    |||| |||||||||  |||||||||||||||||||||||||||||| |  |||||||||||||||||||||   ||||||||||||||||||| ||||||    
T  7773368 tgatgttattggaagtaatcatggtactagattggtgaagtataattaccaaggacagttattaaggcatcacgccttctgtaatagtccatccgaagtt 7773269  T
Q  157 gtaatgtatgaagaagagtctctactttcactccctgg------tgacaatgagcaaatttaagaaagatcacacaaacaagaagaccgaggttgtgaaa 250  Q
    || ||||||   ||   |||||| ||||||||||||||      ||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  7773268 gtcatgtatactga---gtctctgctttcactccctggccctggtgacaacaagcaaatttaagaaagatcacacaaacaagaagaccgacattgtgaaa 7773172  T
Q  251 tattttcgaccattttcttcatatttatggttatgttgtattatgaactct 301  Q
    |||| || || |||||||||||| ||||  |||| ||||||||||||||||    
T  7773171 tattctcaactattttcttcataattataattatattgtattatgaactct 7773121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 7771818 - 7772020
Alignment:
Q  1 tctgttgatgccattcgtgaccactactttcgacctatatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtata 100  Q
    |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  7771818 tctgttgatgccattcctgatcactactttcaacctatatattctacaaaaaatggtgatattattggaagaaatcttagtactagattggtgaagtata 7771917  T
Q  101 atgataaaggacagttattaaggcatcgatccttctgtaatagtccatcagaagttgtaatgtatgaagaagagtctctactttcactccctggtgacaa 200  Q
    |||||||||||||  ||||| | || || ||||||||||| |||| ||| ||| |||| ||||||  ||||   ||||| |||||||| | |||||||||    
T  7771918 atgataaaggacaactattaggacagcgctccttctgtaacagtcaatctgaaattgtcatgtatacagaa---tctctgctttcactacttggtgacaa 7772014  T
Q  201 tgagca 206  Q
    ||||||    
T  7772015 tgagca 7772020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 7790507 - 7790705
Alignment:
Q  5 ttgatgccattcgtgaccactactttcgacctatatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatga 104  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7790507 ttgatgccattcctgatcactactttcaacctatatattctacaaaatatggtgatattattggaagaaatcatggtactagattggtgaagtataatga 7790606  T
Q  105 taaaggacagttattaaggcatcgatccttctgtaatagtccatcagaagttgtaatgtatgaagaagagtctctactttcactccctggtgacaatgag 204  Q
    |||||||||  ||||| | || || ||||||||||| |||| ||| |||||| | ||||||  ||||   ||||| |||||||| | |||||||||||||    
T  7790607 taaaggacaactattaggacagcgctccttctgtaacagtcaatctgaagttttcatgtatacagaa---tctctgctttcactacttggtgacaatgag 7790703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 7786945 - 7787170
Alignment:
Q  23 actactttcgacctatatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaag 122  Q
    |||||||||  ||||| ||||||||| ||||||||||||||||||||| | ||  |||||||| |||||||||||||||||| ||||||||||| ||| |    
T  7786945 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 7787044  T
Q  123 gcatcgatccttctgtaatagtccatcagaagttgtaatgtatgaagaagagtctctactttcactccctggtgacaatgagcaaatttaagaaagatca 222  Q
    |||||  |||||||| || |||||||| ||||||||  |||||     ||||||||||||||||||| | |||||| |||||||  |||||| ||||| |    
T  7787045 gcatcactccttctgcaacagtccatccgaagttgtcgtgtat---acagagtctctactttcactctccggtgacgatgagcatgtttaag-aagatga 7787140  T
Q  223 cacaaacaagaagaccgaggttgtgaaata 252  Q
    |||| ||||||| |  ||||||||||||||    
T  7787141 cacagacaagaacaatgaggttgtgaaata 7787170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 7237360 - 7237068
Alignment:
Q  22 cactactttcgacctatatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaa 121  Q
    ||||||||||  |||||| | |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||  |||||     
T  7237360 cactactttcaccctatacactctacaaaaaatggtgatattattggaagaagtcatgatactagattggtgaagtataatgataaaggacaactattag 7237261  T
Q  122 ggcatcgatccttctgtaatagtccatcagaagttgtaatgtatgaagaagagtctctactttcactccctggtgacaatgagcaaatttaagaaagatc 221  Q
     | | ||  ||||||||   |||| ||| |||||||| ||||||     ||||||||| |||||||||| |||||||||||||||   |||  ||||||     
T  7237260 cggaccgccccttctgttccagtcaatctgaagttgtcatgtat---acagagtctctgctttcactccttggtgacaatgagcatgctta--aaagatg 7237166  T
Q  222 acacaaacaagaagaccgaggttgtgaaatattttcgacca---ttttcttcatatttatggttatgttgtattatgaactcttgggtggctgcattt 316  Q
    ||||||||||||| |  || ||||||||||||| ||   ||   ||||||| ||||||||  |||| |||| ||||| |||||||| ||| |||||||    
T  7237165 acacaaacaagaacaatgatgttgtgaaatattctccttcattgttttctttatatttataattatattgttttatgtactcttggttggttgcattt 7237068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 7766123 - 7766303
Alignment:
Q  23 actactttcgacctatatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaag 122  Q
    |||||||||  ||||| ||||||||| ||||||||||||||||||||| | ||  |||||||| |||||||||||||||||| ||||||||||| ||| |    
T  7766123 actactttcaccctatgtattctacagaaaatggtgatattattggaaaatatggtggtactaaattggtgaagtataatgacaaaggacagtttttagg 7766222  T
Q  123 gcatcgatccttctgtaatagtccatcagaagttgtaatgtatgaagaagagtctctactttcactccctggtgacaatgagca 206  Q
    |||||  |||||||| || |||||||| ||||||||  |||||      |||||||||||||||||| ||||||||||||||||    
T  7766223 gcatcactccttctgcaacagtccatccgaagttgtcgtgtat---accgagtctctactttcactctctggtgacaatgagca 7766303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 272
Target Start/End: Original strand, 7905010 - 7905269
Alignment:
Q  25 tactttcgacctatatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaaggc 124  Q
    |||||||  ||||| || |||||||| |||||||||||||| |||  ||||| ||||| ||||||||| |||||||||||| |||| ||| |||||||||    
T  7905010 tactttcaccctatgtactctacaaagaatggtgatattatcggaggaaatcttggtagtagattggtaaagtataatgatgaagggcagctattaaggc 7905109  T
Q  125 atcgatccttctgtaatagtccatcagaagttgtaatgt-----------atgaaga-agagtctctactttcactccctggtgacaatgagcaaattta 212  Q
    |||| ||| |||||||||||||||  |||  ||  ||||           ||| | |  |||||||| ||||||||||| ||||| || |||||| ||||    
T  7905110 atcgctccatctgtaatagtccatttgaacctgccatgtacagagttgtcatgtatacggagtctctgctttcactccccggtgataacgagcaagttta 7905209  T
Q  213 agaaagatcacacaaacaagaagaccgaggttgtgaaatattttcgaccattttcttcat 272  Q
    ||||||||| ||||||||||||| | ||||| ||| |||||| || ||||||||||||||    
T  7905210 agaaagatcgcacaaacaagaagtctgaggtcgtggaatattctcaaccattttcttcat 7905269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7773463 - 7773389
Alignment:
Q  1 tctgttgatgccattcgtgaccactactttcgacctatatattctacaaaaaatggtgatattattggaataaat 75  Q
    |||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  7773463 tctgttgaagccattcctgatcactactttcaacctatatattctacaaaaaatggtgatattattggaagaaat 7773389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 48903411 - 48903490
Alignment:
Q  37 atatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagtt 116  Q
    |||| |||| ||||||||||||| || ||||||| |||  |||||||||||||||||||||||||||| |||||||||||    
T  48903411 atatgttcttcaaaaaatggtgacatcattggaacaaaagatggtactagattggtgaagtataatgacaaaggacagtt 48903490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 7801108 - 7801295
Alignment:
Q  46 acaaaaaatggtga---tattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaaggcatcgatccttctgtaata 142  Q
    ||||||||||||||   |||||||| || || | ||||| ||| |||||||||||| |||  |||||| ||| | |||| ||||| ||| |||||||| |    
T  7801108 acaaaaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaagggcagctgttaaagcatcaatcattctgtaaca 7801207  T
Q  143 gtccatcagaagttgtaatgtatgaagaagagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaa 234  Q
    |||||||  ||||||| ||||||      |||||||| |||||||||||||| ||||||||| || |||||| ||||| ||| |||||||||    
T  7801208 gtccatccaaagttgtcatgtat---accgagtctctgctttcactccctggggacaatgagtaagtttaag-aagatgacaaaaacaagaa 7801295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 45343565 - 45343487
Alignment:
Q  38 tatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagtt 116  Q
    |||| ||||||||||  |||||||||||||||| |||| || ||| ||||||||||||||||||| || ||||||||||    
T  45343565 tatactctacaaaaagcggtgatattattggaacaaattatcgtaatagattggtgaagtataataatgaaggacagtt 45343487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 7823440 - 7823627
Alignment:
Q  46 acaaaaaatggtga---tattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaaggcatcgatccttctgtaata 142  Q
    ||||||||||||||   |||||||| || || | ||||| ||| |||||||||||| |||  |||||| ||| | |||  ||||| ||| |||||||| |    
T  7823440 acaaaaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaagggcagctgttagagcatcaatcattctgtaaca 7823539  T
Q  143 gtccatcagaagttgtaatgtatgaagaagagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaa 234  Q
    |||||||  ||||||| ||||||   ||   |||||| |||||||||||||| ||||||||| || |||||| ||||| ||| |||||||||    
T  7823540 gtccatccaaagttgtcatgtataccga---gtctctgctttcactccctggggacaatgagtaagtttaag-aagatgacaaaaacaagaa 7823627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 45384486 - 45384407
Alignment:
Q  43 tctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaag 122  Q
    ||||||||||  |||||||||||||||| | || |   ||||||||||||||||||||||||| |||||||||| |||||    
T  45384486 tctacaaaaagcggtgatattattggaacagatgagattactagattggtgaagtataatgatgaaggacagttgttaag 45384407  T

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Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 326
Target Start/End: Original strand, 48871156 - 48871315
Alignment:
Q  171 agagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaagaccgaggttgtgaaatattttc---gaccattttc 267  Q
    ||||||| | ||||||||||||||||||||||||||  |||||| ||| | |||||||||||||||  |||||| |||| |||| ||    |||||||||    
T  48871156 agagtctttgctttcactccctggtgacaatgagcaggtttaag-aaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttc 48871254  T
Q  268 ttcatatttat--ggttatgttgtattatgaactcttgggtggctgcatttatggggtaat 326  Q
    || ||||||||    |||| ||| |||||| ||| ||||||| |||||||| | |||||||    
T  48871255 ttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtagggtaat 48871315  T

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Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 326
Target Start/End: Original strand, 48876460 - 48876619
Alignment:
Q  171 agagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaagaccgaggttgtgaaatattttc---gaccattttc 267  Q
    ||||||| | ||||||||||||||||||||||||||  |||||| ||| | |||||||||||||||  |||||| |||| |||| ||    |||||||||    
T  48876460 agagtctttgctttcactccctggtgacaatgagcaggtttaag-aaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttc 48876558  T
Q  268 ttcatatttat--ggttatgttgtattatgaactcttgggtggctgcatttatggggtaat 326  Q
    || ||||||||    |||| ||| |||||| ||| ||||||| |||||||| | |||||||    
T  48876559 ttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtagggtaat 48876619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 326
Target Start/End: Original strand, 48886842 - 48887001
Alignment:
Q  171 agagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaagaccgaggttgtgaaatattttc---gaccattttc 267  Q
    ||||||| | ||||||||||||||||||||||||||  |||||| ||| | |||||||||||||||  |||||| |||| |||| ||    |||||||||    
T  48886842 agagtctttgctttcactccctggtgacaatgagcaggtttaag-aaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttc 48886940  T
Q  268 ttcatatttat--ggttatgttgtattatgaactcttgggtggctgcatttatggggtaat 326  Q
    || ||||||||    |||| ||| |||||| ||| ||||||| |||||||| | |||||||    
T  48886941 ttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtagggtaat 48887001  T

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Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 45365816 - 45365726
Alignment:
Q  43 tctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaaggcatcgatcct 133  Q
    ||||||||||  |||||||||||||||| | || ||  || |||||||||||||||||||||| |||||||||| ||| | ||||| ||||    
T  45365816 tctacaaaaagcggtgatattattggaacagatgatcttaatagattggtgaagtataatgatgaaggacagttgttaggacatcgctcct 45365726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 45384355 - 45384291
Alignment:
Q  171 agagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaaga 236  Q
    ||||||||| ||||||||  |||||||||||||||||  ||||| ||||| |||||||||||||||    
T  45384355 agagtctctcctttcactttctggtgacaatgagcaagcttaag-aagatgacacaaacaagaaga 45384291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 48735005 - 48734936
Alignment:
Q  45 tacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacag 114  Q
    |||||||||||||||||||||||||| | |||| |  ||| ||||||||| ||| ||||| |||||||||    
T  48735005 tacaaaaaatggtgatattattggaacagatcaggagactggattggtgaggtacaatgacaaaggacag 48734936  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 50669678 - 50669760
Alignment:
Q  171 agagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaagaccgaggttgtgaaatatt 254  Q
    ||||||||||||||||||||| | || | |||| ||| || || |||||| ||||||||||||||| | ||||| |||||||||    
T  50669678 agagtctctactttcactccccgctgtccatgaacaagttcaa-aaagatgacacaaacaagaagaacaaggttttgaaatatt 50669760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 45371443 - 45371393
Alignment:
Q  262 attttcttcatatttatggttatgttgtattatgaactcttgggtggctgc 312  Q
    |||||||| | ||||||  ||||||||||||||| ||||||||||||||||    
T  45371443 attttcttgaaatttataattatgttgtattatgtactcttgggtggctgc 45371393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 7790764 - 7790817
Alignment:
Q  263 ttttcttcatatttatggttatgttgtattatgaactcttgggtggctgcattt 316  Q
    ||||||| ||||||||  |||| |||| ||||| ||||||||||||||||||||    
T  7790764 ttttctttatatttataattatattgttttatgtactcttgggtggctgcattt 7790817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 7813948 - 7814118
Alignment:
Q  46 acaaaaaatggtga---tattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaaggcatcgatccttctgtaata 142  Q
    ||||||||||||||   |||||||| || || | ||||| ||| |||||||||||| |||  |||||| ||| | |||  ||||| ||| ||||||||      
T  7813948 acaaaaaatggtgaaattattattgtaacaactgatggttctatattggtgaagtacaatagtaaagggcagctgttagagcatcaatcattctgtaacg 7814047  T
Q  143 gtccatcagaagttgtaatgtatgaagaagagtctctactttcactccctggtgacaatgagcaaatttaagaa 216  Q
     ||||||  ||||||| ||||||   ||   |||||| |||||||||||||| ||||||||| || ||||||||    
T  7814048 ctccatccaaagttgtcatgtataccga---gtctctgctttcactccctggggacaatgagtaagtttaagaa 7814118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 45365685 - 45365621
Alignment:
Q  171 agagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaaga 236  Q
    ||||||| | || ||||| ||||||||||||||||||  ||||| ||||| |||||||||||||||    
T  45365685 agagtctttgctgtcacttcctggtgacaatgagcaagcttaag-aagatgacacaaacaagaaga 45365621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 48903548 - 48903593
Alignment:
Q  171 agagtctctactttcactccctggtgacaatgagcaaatttaagaa 216  Q
    |||||||||| |||||||||||||||||| | ||||| ||||||||    
T  48903548 agagtctctattttcactccctggtgacattaagcaagtttaagaa 48903593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 48884291 - 48884376
Alignment:
Q  45 tacaaaaaatggtgatattattggaataaatcatggta---ctagattggtgaagtataatgataaaggacagttattaaggcatc 127  Q
    |||||||| ||||||||||||||||||| ||||||||    |||||||| ||||||||||||||||||||||||| ||| ||||||    
T  48884291 tacaaaaagtggtgatattattggaatagatcatggtcgtgctagattgatgaagtataatgataaaggacagttgttagggcatc 48884376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 29351018 - 29351100
Alignment:
Q  171 agagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaagaccgaggttgtgaaatatt 254  Q
    ||||||| | ||||||||||| |||||||||||||||  ||||| ||||| || ||||||||||||  ||||||||||||||||    
T  29351018 agagtctatgctttcactccccggtgacaatgagcaagcttaag-aagatgactcaaacaagaagaatgaggttgtgaaatatt 29351100  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 307
Target Start/End: Original strand, 9120359 - 9120500
Alignment:
Q  171 agagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaagacc---gaggttgtgaaatattttcg---accatt 264  Q
    ||||||||| ||||||||||||||||||||||| |||  ||||| | ||| |||||||||||||||     |||||| ||||||||| ||    ||||||    
T  9120359 agagtctctgctttcactccctggtgacaatgaacaagcttaagga-gatgacacaaacaagaagaagaatgaggttttgaaatattctccttcaccatt 9120457  T
Q  265 ttcttcatatttatggttatgttgtattatgaactcttgggtg 307  Q
    ||||| || ||||| ||||| ||||  ||||||||||||||||    
T  9120458 ttcttgatttttatagttatattgtgctatgaactcttgggtg 9120500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 42561930 - 42561865
Alignment:
Q  45 tacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaagg 110  Q
    |||||||||||||||||||||||||| | ||  ||||||  |||||||||| ||||| || |||||    
T  42561930 tacaaaaaatggtgatattattggaacagatggtggtaccggattggtgaaatataacgacaaagg 42561865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 47451496 - 47451406
Alignment:
Q  43 tctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaaggcatcgatcct 133  Q
    |||||||||| ||||||||||||||||| | || ||| |||  ||||||| ||||||||||| ||||||||||| |||  |||||| ||||    
T  47451496 tctacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatgacaaaggacagttgttagagcatcgttcct 47451406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 326
Target Start/End: Complemental strand, 11014959 - 11014808
Alignment:
Q  171 agagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaagaccgaggttgtgaaatattttcgaccattttcttc 270  Q
    ||||||||| ||||||||||||||||||| || |||| |||||||    | ||||| | |||||||  |||||||||||  ||| |    ||  |||||     
T  11014959 agagtctctgctttcactccctggtgacagtgggcaattttaaga----tgacacagagaagaagaatgaggttgtgaagcattcttcttcaacttcttg 11014864  T
Q  271 atatttatggttatgttgtattatgaactcttgggtggctgcatttatggggtaat 326  Q
    ||||||||  |||| || |||||| ||||||||||||||||||||| | |||||||    
T  11014863 atatttataattatattatattataaactcttgggtggctgcatttgttgggtaat 11014808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 12200795 - 12200875
Alignment:
Q  34 cctatatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacag 114  Q
    |||||||| |||||||||| |||||||||||||||||   ||  ||||  | ||||||||||||||||| |||||||||||    
T  12200795 cctatatactctacaaaaagtggtgatattattggaactgatagtggtcatggattggtgaagtataataataaaggacag 12200875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 12445223 - 12445303
Alignment:
Q  34 cctatatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacag 114  Q
    |||||||| |||||||||| |||||||||||||||||   ||  ||||  | ||||||||||||||||| |||||||||||    
T  12445223 cctatatactctacaaaaagtggtgatattattggaactgatagtggtcatggattggtgaagtataataataaaggacag 12445303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 4030253 - 4030189
Alignment:
Q  171 agagtctctactttcactccctggtgacaatgagcaaatttaagaaagatcacacaaacaagaaga 236  Q
    ||||||||| ||||||||||||||| |||||||||||  ||||| ||||| || ||||||||||||    
T  4030253 agagtctctgctttcactccctggtaacaatgagcaagcttaag-aagatgactcaaacaagaaga 4030189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 4030384 - 4030311
Alignment:
Q  43 tctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagtt 116  Q
    ||||||| || ||||||||||||||||| | ||  |||||||  ||||||||||||| |||| |||||||||||    
T  4030384 tctacaataagtggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagtt 4030311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 4962121 - 4962089
Alignment:
Q  37 atatattctacaaaaaatggtgatattattgga 69  Q
    |||||||||||||||| ||||||||||||||||    
T  4962121 atatattctacaaaaagtggtgatattattgga 4962089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 21979244 - 21979157
Alignment:
Q  38 tatattctacaaaaaatggtgatattattggaataaatcatggtactagattggtgaagtataatgataaaggacagttattaaggca 125  Q
    |||| ||||||||||||  |||||| ||||||| |||  ||| || |  |||||||||||| ||||||||||||||||| ||| ||||    
T  21979244 tatactctacaaaaaattatgatatcattggaacaaactatgttaatttattggtgaagtacaatgataaaggacagttgttagggca 21979157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 21979108 - 21979076
Alignment:
Q  171 agagtctctactttcactccctggtgacaatga 203  Q
    ||||||||||||||||||||| |||||||||||    
T  21979108 agagtctctactttcactccccggtgacaatga 21979076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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