View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17774_low_5 (Length: 337)
Name: NF17774_low_5
Description: NF17774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17774_low_5 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 42092111 - 42091831
Alignment:
| Q |
11 |
caaagggagatttgaatgaggaagtgacaagaggctgtgaagaaatagaaggcaaagcagagaaagatccactgccattactagttggtgtgggaagttc |
110 |
Q |
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| T |
42092111 |
caaaaggagatttgaatgaggaagtgacaagaggctgtgaagaaatagaagacaaagcagagaaagatccaccgccattactagttggtgtgggaagttc |
42092012 |
T |
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| Q |
111 |
cacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttttgtccagccaccacatccctcgcacaccgccactttttaccgtct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42092011 |
cacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttttgtccagccaccacatccctcgcacaccgccactttttaccgtct |
42091912 |
T |
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| Q |
211 |
gttctccggcaacgacctggctctggatccattgctcctcttccccaatacccactttgcaacactaataaaacacaaaac |
291 |
Q |
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| T |
42091911 |
gttctccggcaacgacctggctctggatccattgctcctcttccccaatacccactttgcaacactaataaaacacaaaac |
42091831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 7246546 - 7246605
Alignment:
| Q |
106 |
agttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttt |
165 |
Q |
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| T |
7246546 |
agttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtacttt |
7246605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 52052075 - 52052018
Alignment:
| Q |
108 |
ttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttt |
165 |
Q |
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| T |
52052075 |
ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtacttt |
52052018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 18199801 - 18199854
Alignment:
| Q |
108 |
ttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagta |
161 |
Q |
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| T |
18199801 |
ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagta |
18199854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 399189 - 399133
Alignment:
| Q |
108 |
ttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtactt |
164 |
Q |
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| T |
399189 |
ttccacaggctttcttgaacggttgcggccacggtgcatgtggcgctcacagtactt |
399133 |
T |
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