View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17774_low_6 (Length: 331)
Name: NF17774_low_6
Description: NF17774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17774_low_6 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 7363847 - 7364165
Alignment:
| Q |
1 |
gaaatcaagtgagaattttgttcttgagaattaaactatatagaaaagcttaagccaagtgtgtacaagatatatcaacagtaaggctaatagttgacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7363847 |
gaaatcaagtgagaattttgttcttgagaattaaactatatagaaaagcttaagccaagtgtgtacaagatatatcaacagtaaggctaatagttgacac |
7363946 |
T |
|
| Q |
101 |
ggttagccttgttcatgatgacaagtagcagctcaaactcactaaaggccacgtttcatatacttgtatttagcacattactacacatttgttttcacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7363947 |
ggttagccttgttcatgatgacaagtagcagctcaaactcactaagggccacgtttcatatacttgtatttagcacattactacacatttgttttcacat |
7364046 |
T |
|
| Q |
201 |
ataaataccttactctaatactgttttggtccata----acacaaacacacactcaaatccatccacattttcat---ttcatttctctgttgaaactga |
293 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
7364047 |
ataaataccttactctaatactgttttggtccataacacacacacacacacactcaaatccatccacattttcatttcttcttttctctgttgtaactga |
7364146 |
T |
|
| Q |
294 |
aacctgagtgtgtcatagt |
312 |
Q |
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| T |
7364147 |
aacctgagtgtgtcatagt |
7364165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 38 - 274
Target Start/End: Complemental strand, 26052779 - 26052537
Alignment:
| Q |
38 |
atatagaaaagcttaagccaagtgtgtacaagatatatcaacagtaaggctaatagttgacacggttagccttgttcatgatgacaagtagcagctcaaa |
137 |
Q |
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| T |
26052779 |
atatagaaaagcttaagccaagtgtgtacaagatatatcaacaataaggctaatagttgacacggttagccttgttcatgatgacaagtagcagctcaaa |
26052680 |
T |
|
| Q |
138 |
ctcactaaaggccacgtttcatatacttgtatttagcacattactacacatttgttttcacatataaataccttactctaatactgttttggtccataac |
237 |
Q |
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|||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |
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| T |
26052679 |
ctcactaagggccacgtttcaaatacttgtattgagcacattactacacatttgttttcacatataaataccttactctaattctgtttttgtacataac |
26052580 |
T |
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| Q |
238 |
ac------aaacacacactcaaatccatccacattttcatttc |
274 |
Q |
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| T |
26052579 |
acacacaaaaacacacactcaaatccatccacattttcatttc |
26052537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 6171510 - 6171430
Alignment:
| Q |
132 |
ctcaaactcactaaaggccacgtttcatatacttgtatttagcacattactacacatttgttttcacatataaatacctta |
212 |
Q |
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| T |
6171510 |
ctcaaactcactaagggccatgtttcatatacttgtatttaacacattactacacatttgttttcagttataaatacctta |
6171430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 79 - 274
Target Start/End: Complemental strand, 32028259 - 32028070
Alignment:
| Q |
79 |
cagtaaggctaatagttgacacggttagccttgttcatgatgacaagtagcagctcaaactcactaaaggccacgtttcatatacttgtatttagcacat |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
32028259 |
cagtaaggctaatagttgacacggttagccttgttcatgatgacaagtagcagctcaaactcactaagggccacgtttcatatacttgaatttagcacat |
32028160 |
T |
|
| Q |
179 |
tactacacatttgttttcacatataaataccttactctaatactgttttggtccataacacaaacacacactcaaatccatccacattttcatttc |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
32028159 |
tactacacatttgttttcacatataaataccttactctaattctgttttggtacat------aacacacactcaaatccatccacattttcatttc |
32028070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 25638914 - 25638794
Alignment:
| Q |
157 |
catatacttgtatttagcacattactacacatttgttttcacatataaataccttactctaatactgttttggtccata----acacaaacacacactca |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||||||| |
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| T |
25638914 |
catatacttgtatttagcacattactacacatttgttttcacatataaataccttactctaattctgttttggt-cataacacacacaaaaacacactca |
25638816 |
T |
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| Q |
253 |
aatccatccacattttcatttc |
274 |
Q |
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|||||||||||||||||||||| |
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| T |
25638815 |
aatccatccacattttcatttc |
25638794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 13858889 - 13858935
Alignment:
| Q |
112 |
ttcatgatgacaagtagcagctcaaactcactaaaggccacgtttca |
158 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
13858889 |
ttcaagatgacaagtagcagctcaaactcactaagggccaagtttca |
13858935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 6857 - 6948
Alignment:
| Q |
189 |
ttgttttcacatataaataccttactctaatactgttttggtccataacaca------aacacacactcaaatccatccacattttcatttc |
274 |
Q |
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||||||||||||||||||||||| |||| || |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6857 |
ttgttttcacatataaataccttgctctgattctgttttggtatataacacacataaaaacacacactcaaatccatccacattttcatttc |
6948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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