View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17774_low_7 (Length: 271)
Name: NF17774_low_7
Description: NF17774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17774_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 36948433 - 36948356
Alignment:
| Q |
173 |
atgctagaacaagaaaggggtagtaggaaatgtaccgcaatggtttgctagttgatgatgatggaaggaaaagaagca |
250 |
Q |
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| T |
36948433 |
atgctagaaaaagaaaggggtagtaggaaatgtaccgcaatggtatgctagttgatgatgatggaaggaaaaggagca |
36948356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 36956499 - 36956432
Alignment:
| Q |
183 |
aagaaaggggtagtaggaaatgtaccgcaatggtttgctagttgatgatgatggaaggaaaagaagca |
250 |
Q |
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| T |
36956499 |
aagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaaagaagca |
36956432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 36935629 - 36935575
Alignment:
| Q |
199 |
gaaatgtaccgcaatggtttgctagttgatgatgatggaaggaaaagaagcacat |
253 |
Q |
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| T |
36935629 |
gaaatgtaccgcaaggggttgctagttgatggtgatggaaggaaaagaagcacat |
36935575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 36956670 - 36956625
Alignment:
| Q |
87 |
tcacacgataagataaacatacatattggtcaaaatagacacacaa |
132 |
Q |
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| T |
36956670 |
tcacacgataagagaaacatacatattggtcaaaatagacacacaa |
36956625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 37066085 - 37066145
Alignment:
| Q |
173 |
atgctagaacaagaaaggggtagtaggaaatgtaccgcaatggtttgctagttgatgatga |
233 |
Q |
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| T |
37066085 |
atgctagaaaaagaaagggaaagtaggaaatgtatcgcaaggattttctagttgatgatga |
37066145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 12493341 - 12493385
Alignment:
| Q |
199 |
gaaatgtaccgcaatggtttgctagttgatgatgatggaaggaaa |
243 |
Q |
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| T |
12493341 |
gaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaa |
12493385 |
T |
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