View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17774_low_8 (Length: 237)
Name: NF17774_low_8
Description: NF17774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17774_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 1817040 - 1816832
Alignment:
| Q |
17 |
cagagatattgaatttcatttttgtatcaaatcacatgtatagta----gtaagatactaatgaccatggttttatggtttttcagacattgacgaatgt |
112 |
Q |
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| T |
1817040 |
cagagatattgaatttcatttttgtatcaaatcacatgtatagtaagtagtaagatactaatgaccatggttttatggtttttcagacattgacgaatgt |
1816941 |
T |
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| Q |
113 |
gcaacaaaaactcatgtatgcaaaaataaagcaaattgtaataacactttggggagtcacacttgtttttgtcccaaggggcaaaccggaaatggaacaa |
212 |
Q |
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| T |
1816940 |
gcaacaaaaactcatgtatgcaaaaataaagcaaattgtaataacactttggggagtcacacttgtttttgtcccaaggggcaaaccggaaatggaacaa |
1816841 |
T |
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| Q |
213 |
aggaaggag |
221 |
Q |
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||||||||| |
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| T |
1816840 |
aggaaggag |
1816832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 1842176 - 1842297
Alignment:
| Q |
96 |
cagacattgacgaatgtgcaacaaaaactcatgtatgcaaaaataaagcaaattgtaataacactttggggagtcacacttgtttttgtcccaaggggca |
195 |
Q |
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| T |
1842176 |
cagacactgacgaatgtgaaaaaaacaaacatggttgcaaaactaaagcaaattgtaaaaacaccattggaaattacacatgtttctgtccccgggggca |
1842275 |
T |
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| Q |
196 |
aaccggaaatggaacaaaggaa |
217 |
Q |
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| T |
1842276 |
atctggagatggaacaaaggaa |
1842297 |
T |
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