View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17774_low_9 (Length: 223)

Name: NF17774_low_9
Description: NF17774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17774_low_9
NF17774_low_9
[»] chr3 (2 HSPs)
chr3 (25-219)||(45382702-45382906)
chr3 (62-108)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (33-113)||(27661703-27661783)
chr6 (76-113)||(26650237-26650274)
chr6 (76-113)||(26756205-26756242)
chr6 (77-117)||(12627824-12627864)
chr6 (73-113)||(29449688-29449728)
chr6 (138-188)||(8148268-8148318)
chr6 (132-185)||(20809178-20809231)
chr6 (84-113)||(28783014-28783043)
chr6 (74-131)||(34057962-34058019)
chr6 (151-187)||(29670971-29671007)
chr6 (74-110)||(30537508-30537544)
chr6 (137-185)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (73-113)||(43160491-43160531)
chr7 (75-122)||(10893872-10893919)
chr7 (71-113)||(650524-650566)
chr7 (77-113)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (74-113)||(28136673-28136712)
chr5 (76-113)||(645342-645379)
chr5 (77-122)||(11601688-11601733)
chr5 (137-185)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (138-180)||(14229600-14229642)
chr8 (73-113)||(32691750-32691790)
chr8 (74-122)||(41686804-41686852)
chr8 (74-122)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (71-167)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (63-113)||(10164460-10164510)
chr4 (75-113)||(28890768-28890806)
chr4 (81-117)||(29388374-29388410)
chr4 (73-113)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (77-122)||(264615-264660)
chr1 (133-173)||(27835482-27835522)
chr1 (77-113)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 45382702 - 45382906
Alignment:
Q  25 agagacatgaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat----------- 113  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  45382702 agagacatgaacactggacttcacactgacattcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacatatgtcggtgac 45382801  T
Q  114 atgttggtgacagacacagacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttcattatttaccaattagtcacttcct 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| |||||    
T  45382802 atgttggtgtcagacacagacaaatgtcggacaccggacatgccttcgatcagaagtat-tgtgctacaaagttcattatttaccaattagtcaattcct 45382900  T
Q  214 ttgctt 219  Q
    ||||||    
T  45382901 ttgctt 45382906  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 47362558 - 47362604
Alignment:
Q  62 cgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaat 108  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||    
T  47362558 cgtcaacatcagtaataatttaagaaaattacataattgaatgtaat 47362604  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 27661703 - 27661783
Alignment:
Q  33 gaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    |||||||| |||| ||||| ||||| ||||||||||||   ||||||||||||||||||| |||||| |||||||||||||    
T  27661703 gaacaccgaactcgacactaacactgattcgtcaacattgatagtaatttaagaaaataatatatttcaatgtaatcacat 27661783  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 26650274 - 26650237
Alignment:
Q  76 gtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650274 gtaatttaagaaaataacatatttgaatgtaatcacat 26650237  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 26756242 - 26756205
Alignment:
Q  76 gtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756242 gtaatttaagaaaataacatatttgaatgtaatcacat 26756205  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 12627864 - 12627824
Alignment:
Q  77 taatttaagaaaataacatatttgaatgtaatcacatatgt 117  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  12627864 taatttaagaaaataacatatttcaatgtaatcatatatgt 12627824  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 29449688 - 29449728
Alignment:
Q  73 gtagtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  29449688 gtagtaatttcagaaaataacataattgaatgtaatcacat 29449728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 8148318 - 8148268
Alignment:
Q  138 tgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttc 188  Q
    ||||||||||| ||||||||||| ||| |||||||| |||||||| |||||    
T  8148318 tgtcggacaccagacatgccttccatcggaaatgtcggtgctacatagttc 8148268  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 20809231 - 20809178
Alignment:
Q  132 gacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 185  Q
    |||| ||||||||||||||||||||||||||||  || ||||  ||||||||||    
T  20809231 gacacatgtcggacaccggacatgccttcgatccaaagtgtcgatgctacaaag 20809178  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 28783043 - 28783014
Alignment:
Q  84 agaaaataacatatttgaatgtaatcacat 113  Q
    ||||||||||||||||||||||||||||||    
T  28783043 agaaaataacatatttgaatgtaatcacat 28783014  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 34057962 - 34058019
Alignment:
Q  74 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacaca 131  Q
    ||||||| ||||||||| ||||| |||| ||||||||||| ||| |||| ||||||||    
T  34057962 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacaca 34058019  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 29670971 - 29671007
Alignment:
Q  151 acatgccttcgatcagaaatgtctgtgctacaaagtt 187  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  29670971 acatgccttcgatcagaaatgtcggtggtacaaagtt 29671007  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 30537508 - 30537544
Alignment:
Q  74 tagtaatttaagaaaataacatatttgaatgtaatca 110  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  30537508 tagtaatttaagaaaataacataattgaatgttatca 30537544  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 31811989 - 31812037
Alignment:
Q  137 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 185  Q
    ||||||||||| ||||||||||| |||||||  |||| |||||||||||    
T  31811989 atgtcggacactggacatgcctttgatcagaggtgtcagtgctacaaag 31812037  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 43160491 - 43160531
Alignment:
Q  73 gtagtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43160491 gtagtaatttaagaaaataacataattgaatgtaatcacat 43160531  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 10893919 - 10893872
Alignment:
Q  75 agtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 122  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  10893919 agtaatttaagaaaatgacataattgaatgtaatcacatgtgttggtg 10893872  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 650524 - 650566
Alignment:
Q  71 cagtagtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||    
T  650524 cagtagtaatttaagaaaatgacataattgaatgcaatcacat 650566  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 18750887 - 18750923
Alignment:
Q  77 taatttaagaaaataacatatttgaatgtaatcacat 113  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  18750887 taatttaagaaaatgacataattgaatgtaatcacat 18750923  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 28136673 - 28136712
Alignment:
Q  74 tagtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28136673 tagtaatttaagaaaataacatatttcaatgtaatcacat 28136712  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 645342 - 645379
Alignment:
Q  76 gtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  645342 gtaatttaagaaaatgacataattgaatgtaatcacat 645379  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 11601688 - 11601733
Alignment:
Q  77 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 122  Q
    |||||||||||| |||  || |||||||||||||||||||||||||    
T  11601688 taatttaagaaactaaattaattgaatgtaatcacatatgttggtg 11601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 12478334 - 12478382
Alignment:
Q  137 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 185  Q
    ||||| |||||| |||| |||||| |||||||||||| |||||||||||    
T  12478334 atgtcagacaccagacacgccttccatcagaaatgtcggtgctacaaag 12478382  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 14229600 - 14229642
Alignment:
Q  138 tgtcggacaccggacatgccttcgatcagaaatgtctgtgcta 180  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  14229600 tgtcggacaccggacatgccttcgatcagaagtgtcagtgcta 14229642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 32691750 - 32691790
Alignment:
Q  73 gtagtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  32691750 gtagtaatttaagaaaatgacataattgaatgtaatcacat 32691790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 41686852 - 41686804
Alignment:
Q  74 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 122  Q
    ||||||||||||||||||||||| |||| | ||||||||| ||||||||    
T  41686852 tagtaatttaagaaaataacatagttgagtctaatcacatgtgttggtg 41686804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 31681881 - 31681833
Alignment:
Q  74 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 122  Q
    ||||||||||||||||| ||||| ||||||| |||||||| ||| ||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtg 31681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 9957045 - 9956949
Alignment:
Q  71 cagtagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacacagacaaatgtcggacaccggacatgccttcgatcaga 167  Q
    ||||| |||||| | |||||||  |||||||| ||||| |||| |||  ||| | ||||| |||| ||||| ||||||||||||||||| |||||||    
T  9957045 cagtaataatttgacaaaataaattatttgaacgtaatgacatgtgtccgtgccggacaccgacacatgtcagacaccggacatgcctttgatcaga 9956949  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 10164460 - 10164510
Alignment:
Q  63 gtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    ||||||| | ||||||||||||||||||  |||| ||||||||||||||||    
T  10164460 gtcaacaccggtagtaatttaagaaaatggcataattgaatgtaatcacat 10164510  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 28890768 - 28890806
Alignment:
Q  75 agtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  28890768 agtaatttaagaaaataacataattgaatgcaatcacat 28890806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 29388410 - 29388374
Alignment:
Q  81 ttaagaaaataacatatttgaatgtaatcacatatgt 117  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  29388410 ttaagaaaatgacataattgaatgtaatcacatatgt 29388374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 45615467 - 45615427
Alignment:
Q  73 gtagtaatttaagaaaataacatatttgaatgtaatcacat 113  Q
    |||||||||||||||||| ||||| ||||| ||||||||||    
T  45615467 gtagtaatttaagaaaatgacataattgaacgtaatcacat 45615427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 264615 - 264660
Alignment:
Q  77 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 122  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||    
T  264615 taatttaagaaagtaacatacttaaatgtaatcacatgtgttggtg 264660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 27835482 - 27835522
Alignment:
Q  133 acaaatgtcggacaccggacatgccttcgatcagaaatgtc 173  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  27835482 acaaatgtcggacaccagacatgccttcaatcagaagtgtc 27835522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 43609866 - 43609830
Alignment:
Q  77 taatttaagaaaataacatatttgaatgtaatcacat 113  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  43609866 taatttgagaaaataacataattgaatgtaatcacat 43609830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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