View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_high_1 (Length: 659)
Name: NF17775_high_1
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 43 - 640
Target Start/End: Complemental strand, 7949852 - 7949248
Alignment:
| Q |
43 |
ctggcatcttcagaaacaatcagggtgactccaaaggatgttttgctgcaaacatcggtattgttaactctttacatgctgaattaatgggtattattat |
142 |
Q |
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| T |
7949852 |
ctggaatcttcagaaacaatcagggtgactccaaaggatgttttgctg--aacatcggtattgctaactctttacatgctgaattaataggtattattat |
7949755 |
T |
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| Q |
143 |
ggctgttgaaattgcttttgataaaaactggcatcacctttggatagagactgactccaagatagctaccttggccatcaagtcaccctctatagttcct |
242 |
Q |
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| T |
7949754 |
ggctgttgaaattgtttttgataaaaaatggcatcacctttggatagagactgactccaagatagctacgttggccatcaagtcaccctctatagttcct |
7949655 |
T |
|
| Q |
243 |
tggaaattaaagaatagatggaacaactgtgttggaaagcttcaatctatgcaattcatcctgtctcatatttacagagaaggaaatcactgtgctgaca |
342 |
Q |
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| T |
7949654 |
tggaaattaaagaatagatggaacaactgtgttggaaagcttcaatctatgcaattcatcttgtctcatatttacagagaagaaaatcatcgtgctgaca |
7949555 |
T |
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| Q |
343 |
aacttgcaaacttaggcttatctattgttgatttcacttggtggtcctttccttcaattgtaattagaggggacctaggtaggaacaagctaggtcttcc |
442 |
Q |
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| T |
7949554 |
aacttgcaaacttaggcttatctattgctgatttcactt-gtggtcctttcctccaattataattagaggggacctaggtaggaataagctaggtcttcc |
7949456 |
T |
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| Q |
443 |
caactttcgattttgttaatgttcctttgatggtttggttttgcc-ccctctcttttgtgttacactttttcatttatatattatagatgtcgcct-tag |
540 |
Q |
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| T |
7949455 |
caactttcgattttgttaatgttcctttgagggtttggttttgccaccctctcttttgtattacaatttttcatttatatattatagatgtcgcctcaag |
7949356 |
T |
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| Q |
541 |
gctcgtcaattat--------nnnnnnnnnnnttattttacaaaataaagtgacaaccatgccaagacacttacaagttccaacccccgcatttgaaacc |
632 |
Q |
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| T |
7949355 |
gctcatcagttataaaaataaaataaaataaattattatacaaaataaagtgacaaccatgccaagacacttacaagttccaacccccacatttgaagcc |
7949256 |
T |
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| Q |
633 |
gtctctcc |
640 |
Q |
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| T |
7949255 |
gtctctcc |
7949248 |
T |
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