View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_high_13 (Length: 322)
Name: NF17775_high_13
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 26969 - 26676
Alignment:
| Q |
19 |
atggagacatgcatttagggagtggttatacatatatctaccttagacaccaattaagatcaaatttagtttatgcttgagnnnnnnnagcagttaactg |
118 |
Q |
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| T |
26969 |
atggagacatgcatttagggagtggttatacatatatctaccttagacaccaattaagatcaaatttagtttatgcttgagtttttttagcagttaactg |
26870 |
T |
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| Q |
119 |
aagtttcttagttacatcgtatacctaatagctaattatttatattatgcactatgtttaccttgttgaatgcaattcttcagtttgttttcagnnnnnn |
218 |
Q |
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| T |
26869 |
aagtttcttagttacatcgtataactaatagctaattatttatattatgcactatgtttactttgttgaatgcaattcttcagtttgttttcagaaaaaa |
26770 |
T |
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| Q |
219 |
ngcaaattgattcttcaaaattcagttcaagataccgcaggctcaaaagtatcatgtagtttactgaatgtggaaagtgtgatagatgatgatg |
312 |
Q |
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| T |
26769 |
agcaaattgattcttcaaaattcagttcaagatactgcaggctcaaaagtatcatgtagtttactgaatgtggaaagtgtgatagatgatgatg |
26676 |
T |
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