View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_high_15 (Length: 307)
Name: NF17775_high_15
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 13042702 - 13042499
Alignment:
| Q |
17 |
ttaaaatgtttgcaaattggtttcctctagtcgttacaagtccttctttaagtccgccaagaaaaaacattatattatacagatttcttcattattttgt |
116 |
Q |
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| T |
13042702 |
ttaaaatgtttgcaaattggtttcctctagtcgttacaagtccttgtttaagtccgccaagaaaaaacattatattatacagatttcttcattattttgt |
13042603 |
T |
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| Q |
117 |
tctttttatcatatctaatttttgctgaagagcatttatgtcagtttatacatacaaatggtttttatcatcattctgtctcatactaaactactaaata |
216 |
Q |
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| T |
13042602 |
tctttttatcatatctaatttttgctgaagagcatttatgtcagtttatacatacaaatggtttttatcatcattctgtttcatactaaactactaaata |
13042503 |
T |
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| Q |
217 |
atca |
220 |
Q |
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|||| |
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| T |
13042502 |
atca |
13042499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 9003276 - 9003357
Alignment:
| Q |
91 |
ttatacagatttcttcattattttgttctttttatcatatctaatttttgctgaagagcatttatgtcagtttatacataca |
172 |
Q |
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| T |
9003276 |
ttataaagatttcttcatcattttattctttttattgtatctagtttttgcttaagagcatgtttggcattttataaataca |
9003357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 8982048 - 8982115
Alignment:
| Q |
99 |
atttcttcattattttgttctttttatcatatctaatttttgctgaagagcatttatgtcagtttata |
166 |
Q |
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| T |
8982048 |
atttctttgttattttattctttttatcgtatctaatttttgtttaagagcatgtatgccattttata |
8982115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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