View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17775_high_16 (Length: 300)
Name: NF17775_high_16
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_high_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 25206628 - 25206348
Alignment:
| Q |
3 |
tggagaagc-aaaggaaaggtaatgttctaatgaattttcttcatcacttcaatatgtttttgagccttcgatattaggtatagaaaattgataaacttc |
101 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25206628 |
tggagaagcgaaaggaaaggtaatgttctaatgaattttcttcatcacttcaatatgtttttgagccttcgatattaggtatagaaaattgataaacttc |
25206529 |
T |
|
| Q |
102 |
attcattgaatgtgtcacctagacgcggaaactcgtcaatgtgaaaacaaacaaacatagcataaatagaccgacgtaaaagaacttatataatttttta |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25206528 |
attcattgaatgtgtcacctagacgcggaaactcgtcaatgtgaaaaca----aacatagcataaatagaccgacgcaaaagaacttatataatttttta |
25206433 |
T |
|
| Q |
202 |
atttaataaaactcattgaggctgatgcannnnnnnngtacttacttagggcaatgagcacatcaccatactatatgagcaaaat |
286 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25206432 |
atttaataaaactcattgaggctgatgcattttttttgtacttacttagggcaatgagcacatcaccatactatatgagcaaaat |
25206348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University