View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17775_high_20 (Length: 279)

Name: NF17775_high_20
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17775_high_20
NF17775_high_20
[»] chr6 (15 HSPs)
chr6 (14-231)||(31514581-31514798)
chr6 (59-261)||(31500099-31500301)
chr6 (59-261)||(31494713-31494915)
chr6 (59-261)||(31473509-31473711)
chr6 (132-261)||(7848088-7848217)
chr6 (132-261)||(14745295-14745424)
chr6 (149-261)||(22396670-22396782)
chr6 (104-181)||(14745338-14745415)
chr6 (169-261)||(10907232-10907325)
chr6 (105-197)||(31514709-31514801)
chr6 (112-195)||(7848117-7848200)
chr6 (174-260)||(8404235-8404322)
chr6 (174-260)||(21038167-21038254)
chr6 (119-195)||(22396677-22396753)
chr6 (174-260)||(21083788-21083874)
[»] chr4 (4 HSPs)
chr4 (104-261)||(6821063-6821220)
chr4 (132-231)||(6821130-6821229)
chr4 (174-260)||(15873344-15873431)
chr4 (174-244)||(9563987-9564058)
[»] chr2 (6 HSPs)
chr2 (169-261)||(35922692-35922784)
chr2 (173-261)||(13361410-13361500)
chr2 (104-184)||(35922663-35922744)
chr2 (169-261)||(32252530-32252625)
chr2 (210-261)||(44586894-44586945)
chr2 (174-259)||(24724912-24724998)
[»] chr3 (5 HSPs)
chr3 (174-260)||(13929182-13929269)
chr3 (174-260)||(21974817-21974904)
chr3 (174-260)||(21997248-21997335)
chr3 (174-260)||(16363042-16363127)
chr3 (177-260)||(22159392-22159475)
[»] scaffold1001 (1 HSPs)
scaffold1001 (220-261)||(1013-1054)
[»] scaffold0385 (1 HSPs)
scaffold0385 (174-260)||(13807-13892)
[»] chr7 (1 HSPs)
chr7 (174-260)||(4532170-4532257)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 31514581 - 31514798
Alignment:
Q  14 agagagaagtcagaatgtacaagactccatgcgttgatgcatgtgcatgcgtacattggagtgtattttctggtggtttatttgatgccaccagtaagat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31514581 agagagaagtcagaatgtacaagactccatgcgttgatgcatgtgcatgcgtacattggagtgtattttgtggtggtttatttgatgccaccagtaagat 31514680  T
Q  114 acttttggcaactatgttgagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaag 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||    
T  31514681 acttttggcaactatgttgagaaaagttcagtaaaatatttctggcaaccatgttgagaaaagtccagtaatatatctctggcaatcatgttgagaaaag 31514780  T
Q  214 ttcaataatataactctg 231  Q
    | ||||||||||||||||    
T  31514781 tccaataatataactctg 31514798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 59 - 261
Target Start/End: Original strand, 31500099 - 31500301
Alignment:
Q  59 catgcgtacattggagtgtattttctggtggtttatttgatgccaccagtaagatacttttggcaactatgttgagaaaagttcaataaaatatttctgg 158  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31500099 catgcgtacattggagtgtattttgtggtggtttatttgatgccaccagtaagatacttttggcaactatgttgagaaaagttcagtaaaatatttctgg 31500198  T
Q  159 caaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtacca 258  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  31500199 caactatgttgagaaaagtccagtaacatatctctggcaaccatgttgagaaaagtccaataatataactctggcaaaatgatgagtaagtgtggtacca 31500298  T
Q  259 cat 261  Q
    |||    
T  31500299 cat 31500301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 59 - 261
Target Start/End: Original strand, 31494713 - 31494915
Alignment:
Q  59 catgcgtacattggagtgtattttctggtggtttatttgatgccaccagtaagatacttttggcaactatgttgagaaaagttcaataaaatatttctgg 158  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  31494713 catgcgtacattggagtgtattttgtggtggtttatttgatgccaccagtaagatacttttggcaactatgttgagaaaagttcagtaaaatatctctgg 31494812  T
Q  159 caaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtacca 258  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||    
T  31494813 caaccatgttgagaaaagtccagtaacatatctctggcaaccatgttgagaaaaatccaataatataactctggcaaaatgatgagtaagtgtggtacca 31494912  T
Q  259 cat 261  Q
    |||    
T  31494913 cat 31494915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 59 - 261
Target Start/End: Original strand, 31473509 - 31473711
Alignment:
Q  59 catgcgtacattggagtgtattttctggtggtttatttgatgccaccagtaagatacttttggcaactatgttgagaaaagttcaataaaatatttctgg 158  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31473509 catgcgtacattggagtgtattttgtggtggtttatttgatgccactagtaagatacttttggcaactatgttgagaaaagttcattaaaatatttctgg 31473608  T
Q  159 caaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtacca 258  Q
    || ||||||||||||||||| |||||||||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||    
T  31473609 cacccatgttgagaaaagtctagtaacatatctctggcaaccatgttgagaaaagtccagtaatataactctggcaaaatgatgagtaagtgtggtacca 31473708  T
Q  259 cat 261  Q
    |||    
T  31473709 cat 31473711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 7848217 - 7848088
Alignment:
Q  132 gagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctg 231  Q
    |||||||||||| ||| ||| |||||||||| ||||||||||||||||  |||||||||||| | ||| |||||||||||||| || |||||||||||||    
T  7848217 gagaaaagttcactaacatacttctggcaactatgttgagaaaagtcctataacatatctctagcaactatgttgagaaaagtccactaatataactctg 7848118  T
Q  232 acaaaatgatgagtaagtgtggtaccacat 261  Q
     ||||| |||||||| ||||||||||||||    
T  7848117 gcaaaacgatgagtaggtgtggtaccacat 7848088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 132 - 261
Target Start/End: Complemental strand, 14745424 - 14745295
Alignment:
Q  132 gagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctg 231  Q
    ||||||||| || ||| ||| |||||||||| |||||||||||||| ||||||||||||||||  |||||||||||||||||| ||  |||| |||||||    
T  14745424 gagaaaagtccagtaatatacttctggcaactatgttgagaaaagttcagtaacatatctctgacaaccatgttgagaaaagtccagcaataaaactctg 14745325  T
Q  232 acaaaatgatgagtaagtgtggtaccacat 261  Q
     |||||||||||||| ||||||||||||||    
T  14745324 gcaaaatgatgagtaggtgtggtaccacat 14745295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 22396670 - 22396782
Alignment:
Q  149 atatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaag 248  Q
    |||| ||||||||  ||||||| |||| ||||||||||||||||||| ||||||||||||||||||  | ||||||||||||| |||||||||||||| |    
T  22396670 atatctctggcaattatgttgaaaaaattccagtaacatatctctggcaaccatgttgagaaaagtctagtaatataactctggcaaaatgatgagtagg 22396769  T
Q  249 tgtggtaccacat 261  Q
    |||||||||||||    
T  22396770 tgtggtaccacat 22396782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 14745415 - 14745338
Alignment:
Q  104 ccagtaagatacttttggcaactatgttgagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccag 181  Q
    ||||||| |||||| ||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||    
T  14745415 ccagtaatatacttctggcaactatgttgagaaaagttcagtaacatatctctgacaaccatgttgagaaaagtccag 14745338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 10907232 - 10907325
Alignment:
Q  169 gagaaaagtccagtaacatatctctggtaaccatgttg-agaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacat 261  Q
    ||||||||||||||||||||  ||||| ||| |||| | |||||||| || ||||||||||||| |||||||| ||||| ||||||||||||||    
T  10907232 gagaaaagtccagtaacatacttctggcaactatgtgggagaaaagtccattaatataactctggcaaaatgacgagtaggtgtggtaccacat 10907325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 31514709 - 31514801
Alignment:
Q  105 cagtaagatacttttggcaactatgttgagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctggta 197  Q
    |||||| ||| || ||||||| |||||||||||||| || ||| |||| |||||||| |||||||||||||||||| ||| ||| ||||||||    
T  31514709 cagtaaaatatttctggcaaccatgttgagaaaagtccagtaatatatctctggcaatcatgttgagaaaagtccaataatataactctggta 31514801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 7848200 - 7848117
Alignment:
Q  112 atacttttggcaactatgttgagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctgg 195  Q
    |||||| |||||||||||||||||||||| | |||| |||| ||| ||||| ||||||||||||||||| ||| ||| ||||||    
T  7848200 atacttctggcaactatgttgagaaaagtcctataacatatctctagcaactatgttgagaaaagtccactaatataactctgg 7848117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 8404235 - 8404322
Alignment:
Q  174 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccaca 260  Q
    |||||||||||||||||||||| || | ||| |||||||||| || ||| ||||||||| |||||||||||||| | |||||||||||    
T  8404235 aagtccagtaacatatctctggcaaactatgatgagaaaagtccagtaacataactctggcaaaatgatgagtaggagtggtaccaca 8404322  T

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Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 21038167 - 21038254
Alignment:
Q  174 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccaca 260  Q
    ||||||||||||||| |||||| || | ||| |||||||||| || ||| ||||||||| |||||||||||||||| ||| |||||||    
T  21038167 aagtccagtaacatacctctggcaaactatgatgagaaaagtccagtaacataactctggcaaaatgatgagtaagagtgataccaca 21038254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 22396677 - 22396753
Alignment:
Q  119 tggcaactatgttgagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctgg 195  Q
    |||||| |||||||| |||| | || ||| |||| ||||||||||||||||||||||||| ||||| ||| ||||||    
T  22396677 tggcaattatgttgaaaaaattccagtaacatatctctggcaaccatgttgagaaaagtctagtaatataactctgg 22396753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 21083788 - 21083874
Alignment:
Q  174 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccaca 260  Q
    ||||||||||||||| |||||| || | ||| |||||||||| || |||  ||| |||| |||||||||||||||| |||||||||||    
T  21083788 aagtccagtaacatacctctggcaaactatgatgagaaaagtccagtaac-taattctggcaaaatgatgagtaagagtggtaccaca 21083874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 104 - 261
Target Start/End: Complemental strand, 6821220 - 6821063
Alignment:
Q  104 ccagtaagatacttttggcaactatgttgagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatg 203  Q
    ||||||| |||||| || ||||||||||||||||||| || ||| ||| ||||| |||| |||||||||||||||||||||||||||||||| ||| |||    
T  6821220 ccagtaacatacttctgacaactatgttgagaaaagtccagtaacatacttctgacaactatgttgagaaaagtccagtaacatatctctggcaactatg 6821121  T
Q  204 ttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacat 261  Q
    ||||||||||| || ||||||||||||| ||||| |||||||| ||||||||||||||    
T  6821120 ttgagaaaagtccagtaatataactctggcaaaacgatgagtaggtgtggtaccacat 6821063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 6821229 - 6821130
Alignment:
Q  132 gagaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctg 231  Q
    ||||||| | || ||| ||| ||||| |||| |||||||||||||||||||||||||  ||||  ||| |||||||||||||| || ||| ||| |||||    
T  6821229 gagaaaattccagtaacatacttctgacaactatgttgagaaaagtccagtaacatacttctgacaactatgttgagaaaagtccagtaacatatctctg 6821130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 15873344 - 15873431
Alignment:
Q  174 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccaca 260  Q
    |||||||||||||||||||||  || | ||| |||||||||| || ||| ||||||||| | |||||||||||| | |||||||||||    
T  15873344 aagtccagtaacatatctctgacaaactatgatgagaaaagtccagtaacataactctggctaaatgatgagtaggagtggtaccaca 15873431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 9564058 - 9563987
Alignment:
Q  174 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgag 244  Q
    |||| ||||||||||||||||| || | |||  |||||||||||| ||| ||||||||||||||||| ||||    
T  9564058 aagtacagtaacatatctctggcaaactatgacgagaaaagttcagtaacataactctgacaaaatgttgag 9563987  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 35922692 - 35922784
Alignment:
Q  169 gagaaaagtccagtaacatatctctggtaaccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacat 261  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| || ||||| ||||||| ||||| ||||||||  |||||||||||||    
T  35922692 gagaaaagtccagtaacatatctctggcaactatgttgagaaaagtccagtaataaaactctggcaaaacgatgagtagatgtggtaccacat 35922784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 13361500 - 13361410
Alignment:
Q  173 aaagtccagtaacatatctctgg-taaccatgttgagaaaagttcaataatataactctgacaaaa-tgatgagtaagtgtggtaccacat 261  Q
    |||||||||||||||| ||||||  ||| |||| ||||||||| || ||| ||||||||| ||||| ||| ||||| ||||||||||||||    
T  13361500 aaagtccagtaacatacctctggcaaactatgtagagaaaagtccagtaacataactctggcaaaattgaagagtaggtgtggtaccacat 13361410  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 35922663 - 35922744
Alignment:
Q  104 ccagtaagatacttttggcaactatgttg-agaaaagttcaataaaatatttctggcaaccatgttgagaaaagtccagtaa 184  Q
    ||||||| |||||| ||| || ||||| | |||||||| || ||| |||| ||||||||| |||||||||||||||||||||    
T  35922663 ccagtaacatacttctggaaattatgtgggagaaaagtccagtaacatatctctggcaactatgttgagaaaagtccagtaa 35922744  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 32252530 - 32252625
Alignment:
Q  169 gagaaaagtccagtaacatat--ctctggtaaccatgttg-agaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacat 261  Q
    ||||||||||||||||||||   |||| | ||| |||| | |||||||| || |||||||||||||  |||||| |||||| ||||||||||||||    
T  32252530 gagaaaagtccagtaacatacacctctcgaaactatgtgggagaaaagtccagtaatataactctgcaaaaatggtgagtaggtgtggtaccacat 32252625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 44586894 - 44586945
Alignment:
Q  210 aaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccacat 261  Q
    ||||| || ||| ||||||||| |||||||||||||| ||||||||||||||    
T  44586894 aaagtccagtaacataactctggcaaaatgatgagtaggtgtggtaccacat 44586945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 24724912 - 24724998
Alignment:
Q  174 aagtccagtaacatatctctggtaa-ccatgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccac 259  Q
    ||||||||||||||| |||||| || | ||| |||||||||| || ||| |||||| |||||| ||| |||||| | ||||||||||    
T  24724912 aagtccagtaacatacctctggcaagctatgatgagaaaagtccagtaacataactttgacaatatggtgagtaggagtggtaccac 24724998  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 13929182 - 13929269
Alignment:
Q  174 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccaca 260  Q
    ||||||||||||||| |||||| || | ||| |||||||||| || ||| ||||||||| |||||||||||||| | |||||||||||    
T  13929182 aagtccagtaacatacctctggcaaactatgatgagaaaagtccagtaacataactctggcaaaatgatgagtaggagtggtaccaca 13929269  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 260
Target Start/End: Complemental strand, 21974904 - 21974817
Alignment:
Q  174 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccaca 260  Q
    |||||||||||||||||||||| || | ||| |||||||||| || ||| ||||||||| |||||||||||||| | || ||||||||    
T  21974904 aagtccagtaacatatctctggcaaactatgatgagaaaagtccagtaacataactctggcaaaatgatgagtaggagttgtaccaca 21974817  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 260
Target Start/End: Complemental strand, 21997335 - 21997248
Alignment:
Q  174 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccaca 260  Q
    |||||||||||||||||||||| || | ||| |||||||||| || ||| ||||||||| |||||||||||||| | || ||||||||    
T  21997335 aagtccagtaacatatctctggcaaactatgatgagaaaagtccagtaacataactctggcaaaatgatgagtaggagttgtaccaca 21997248  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 16363042 - 16363127
Alignment:
Q  174 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccaca 260  Q
    |||||||||||||||||||||| || | ||| |||||||||| || ||| |  |||||| |||||||||||||| | |||||||||||    
T  16363042 aagtccagtaacatatctctggcaaactatgatgagaaaagtccattaaca--actctggcaaaatgatgagtaggagtggtaccaca 16363127  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 22159475 - 22159392
Alignment:
Q  177 tccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccaca 260  Q
    ||||||||||||||||||| || | ||| |||||||||| || ||| ||||||||| | |||||||||||| | |||||||||||    
T  22159475 tccagtaacatatctctggcaaactatgatgagaaaagt-cagtaacataactctggcgaaatgatgagtatgagtggtaccaca 22159392  T

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Target: scaffold1001 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 1054 - 1013
Alignment:
Q  220 aatataactctgacaaaatgatgagtaagtgtggtaccacat 261  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  1054 aatataactctgacaaaatgacgagtaggtgtggtaccacat 1013  T

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Target: scaffold0385 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 260
Target Start/End: Complemental strand, 13892 - 13807
Alignment:
Q  174 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccaca 260  Q
    |||||||||||||||||||||| || | ||| |||||||||| || ||| |  |||||| |||||||||||||| | |||||||||||    
T  13892 aagtccagtaacatatctctggcaaactatgatgagaaaagtccattaaca--actctggcaaaatgatgagtaggagtggtaccaca 13807  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 4532170 - 4532257
Alignment:
Q  174 aagtccagtaacatatctctggtaacc-atgttgagaaaagttcaataatataactctgacaaaatgatgagtaagtgtggtaccaca 260  Q
    ||||| ||||||||| |||||| || | ||| |||||||||| || ||| |||||| || |||||||||||||| | |||||||||||    
T  4532170 aagtctagtaacatacctctggcaaactatgatgagaaaagtccagtaacataactatggcaaaatgatgagtaggagtggtaccaca 4532257  T

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