View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_high_3 (Length: 535)
Name: NF17775_high_3
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 11 - 516
Target Start/End: Complemental strand, 38418305 - 38417800
Alignment:
| Q |
11 |
cacagattaagtatcaaatacttgtaagcaatggtattaggattcagtccaaactgagacctggattcgtacaattggagtgcgacattcaccatcccaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38418305 |
cacagattaagtatcaaatacttgtaagcaatggtattaggattcagtccaaactgagacctggattcgtacaattggagcgcgacattcaccatcccaa |
38418206 |
T |
|
| Q |
111 |
ttttgcaaaagaaacacaagacaacattcatagtaatctgatcaggtggaatagaagactcgtgcatatccatcaacaaatcatagacctcgcgaagccg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38418205 |
ttttgcaaaagaaacacaagacaacattcatagtaatctgatcaggtggaatagaagactcgtacatatccatcaacaaatcatagacctcgcgaagccg |
38418106 |
T |
|
| Q |
211 |
attctccctcaaaagcctacaaatcaacatgttatatctatataaatgaggaacagacccttcagtatctctcgtctgtctaaaaaactccaaagcgtcg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38418105 |
gttctccctcaaaagcctacaaatcaacatgttatatctatataaatgaggaacagacccttcagtatctctcgtctgtctaaaaaactccaaagcgtcg |
38418006 |
T |
|
| Q |
311 |
tccaacctaccacccttcacaagaccctttatacaaaccccataagcatgttccaaaggaaccaaccccgtgttcccaaactccttaaccaacttaacag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38418005 |
tccaacctaccacccttcacaagaccctttatacaaaccccataagcatgttccaaaggaaccaaccccgtgttcccaaactccttaaccaacttaacag |
38417906 |
T |
|
| Q |
411 |
cacgctcaaactttttcctctcacataacaaacccacaagcatactcacctcaaaatcacgcaactttttcccactacccaacattccgttaacatattc |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38417905 |
cacgctcaaactttttcctctcacataacaaacccacaagcatactcacctcaaaatcacgcaactttttcccactacccaacattccgttaacatattc |
38417806 |
T |
|
| Q |
511 |
ctccgc |
516 |
Q |
| |
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|||||| |
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| T |
38417805 |
ctccgc |
38417800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 494
Target Start/End: Complemental strand, 38410319 - 38409836
Alignment:
| Q |
11 |
cacagattaagtatcaaatacttgtaagcaatggtattaggattcagtccaaactgagacctggattcgtacaattggagtgcgacattcaccatcccaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
38410319 |
cacagattaagtatcaaatacttgtaagccaagttattcggattcagtccaaactgagacctggattcgtacaattggagcgcggcattcaccatcccag |
38410220 |
T |
|
| Q |
111 |
ttttgcaaaagaaacacaagacaacattcatagtaatctgatcaggtggaatagaagactcgtgcatatccatcaacaaatcatagacctcgcgaagccg |
210 |
Q |
| |
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|||||||| ||| |||||||||||| ||||||||| | ||||||||||||| ||||||| | ||||||||||||||||||||| ||||| |||||| |
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| T |
38410219 |
ctttgcaaaggaagcacaagacaacactcatagtaaccatatcaggtggaatacaagactccttcatatccatcaacaaatcatatacctcctgaagcct |
38410120 |
T |
|
| Q |
211 |
attctccctcaaaagcctacaaatcaacatgttatatctatataaatgaggaacagacccttcagtatctctcgtctgtctaaaaaactccaaagcgtcg |
310 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||| |||||| |||| ||||||||||||||||| || |
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| T |
38410119 |
actctccctcaaaagcctacaaatcaacatgttatacctataccaacgaggaacatacccttcagattctctcttctgcctaaaaaactccaaagcctca |
38410020 |
T |
|
| Q |
311 |
tccaacctaccacccttcacaagaccctttatacaaaccccataagcatgttccaaaggaaccaaccccgtgttcccaaactccttaaccaacttaacag |
410 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| | |||||||||||||| || || |||||||| ||||| ||||||||||||||||| ||||| |
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| T |
38410019 |
tcaaacctaccacccttcacaagaccctttatacaatcaccataagcatgttcaaacagattcaaccccgagttcctaaactccttaaccaactcaacag |
38409920 |
T |
|
| Q |
411 |
cacgctcaaactttttcctctcacataacaaacccacaagcatactcacctcaaaatcacgcaactttttcccactacccaaca |
494 |
Q |
| |
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|| |||||| ||||||||||||||| ||| || | ||||| | || |||||| || || ||||||||||||||||| |||||| |
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| T |
38409919 |
catgctcaacctttttcctctcacacaacgaaacaacaagaaaacctacctcagaaccatgcaactttttcccactatccaaca |
38409836 |
T |
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