View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_high_5 (Length: 446)
Name: NF17775_high_5
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 7480649 - 7481086
Alignment:
| Q |
16 |
caactttatgttgggaaacacaatataagtactttagataattagaaatcaacagggagaggattcaatctttcctctattgaatccttgagggaaaatc |
115 |
Q |
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| T |
7480649 |
caactttatgttgggaaacacaatataagtattttagataattagaaatcaatagggagaggattcaatctttcctctattgaatgcttgagtgaaaatc |
7480748 |
T |
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| Q |
116 |
atctaggttgataaatttgtaagctactttttataaagatttattgatgatggatcaaagagttggtttttccttgtaattgtacgttaccnnnnnnngg |
215 |
Q |
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| T |
7480749 |
atctaggttgatagatttgtaagctactttttatgaagatttattgatgatggatcaaagagttggtttttccttgtaattgtacgttacctttttttgg |
7480848 |
T |
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| Q |
216 |
attgaact----------acatcaactttattcttctactatctatctttgtctttggtgtgattgtttggaatttcgtttgcacat-caaaaataattg |
304 |
Q |
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| T |
7480849 |
attgaactacatcaacaaacatcaactttattcttctactatctatctttctctttggtgtgattgtttggaatttcgtttgcacataaaaaaagaattg |
7480948 |
T |
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| Q |
305 |
ttctaggctgaatctttatctgccaagttatttaatttgattgccatcattatttaaattttttaacaaaatgttatgttataaagtttctgtctaatat |
404 |
Q |
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| T |
7480949 |
ttctaggctgaatctttatctgccaagtcatttaatttgattgctattattatttaaattttttaacaaaatgttatgttataaagtttctgtctaat-- |
7481046 |
T |
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| Q |
405 |
taattgtgtatgagggacctgtccaatattcttatttatttt |
446 |
Q |
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| T |
7481047 |
--attgtttttaagggacctgtccaatattcttatttatttt |
7481086 |
T |
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