View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17775_high_6 (Length: 439)

Name: NF17775_high_6
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17775_high_6
NF17775_high_6
[»] chr4 (14 HSPs)
chr4 (21-327)||(3957566-3957872)
chr4 (325-429)||(3959176-3959280)
chr4 (23-321)||(4007672-4007970)
chr4 (61-322)||(3984753-3985014)
chr4 (61-322)||(3999874-4000135)
chr4 (28-321)||(4022830-4023123)
chr4 (83-321)||(3998681-3998919)
chr4 (222-316)||(3815439-3815533)
chr4 (220-327)||(3922309-3922416)
chr4 (220-318)||(3935669-3935767)
chr4 (28-99)||(3935474-3935545)
chr4 (34-99)||(3922120-3922185)
chr4 (276-318)||(3807848-3807890)
chr4 (60-92)||(3808083-3808115)
[»] chr8 (1 HSPs)
chr8 (325-429)||(19167917-19168021)
[»] scaffold0060 (1 HSPs)
scaffold0060 (325-380)||(18706-18761)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 3957566 - 3957872
Alignment:
Q  21 agcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatccttgccaaggactcccaattttgt 120  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3957566 agcacaggatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgctccatccttgccaaggactcccaattttgt 3957665  T
Q  121 taccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcatgtataggtcttttttctctagttttt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3957666 taccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcatgtataggtattttttctctagttttt 3957765  T
Q  221 cagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaaggac 320  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957766 cagatcatgtatgcatgatatacgacccaccatgttcacgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaaggac 3957865  T
Q  321 aacaccc 327  Q
    |||||||    
T  3957866 aacaccc 3957872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 325 - 429
Target Start/End: Original strand, 3959176 - 3959280
Alignment:
Q  325 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3959176 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 3959275  T
Q  425 ctgtg 429  Q
    |||||    
T  3959276 ctgtg 3959280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 23 - 321
Target Start/End: Complemental strand, 4007970 - 4007672
Alignment:
Q  23 cacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatccttgccaaggactcccaattttgtta 122  Q
    |||| |||||||||||| ||||||||| |||   |   ||| |||||||||||||||||||||||||||||||||||||  |||| | ||||  |||| |    
T  4007970 cacaggatgatatgattgttgatctctttccaaatcatctcccccctttgttgggctttgttttttgcttcatccttgctgaggattaccaacattgtga 4007871  T
Q  123 ccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcatgtataggtcttttttctctagtttttca 222  Q
     |||||||| || || |||| |||||||||||    ||||||||| |||||||||||||||||||| | |||| ||||| |   | ||  || |   |||    
T  4007870 acaaattgagttcaacatcagtacaattgatgacaaggatgatgatgaaaaggatggtgtcagtatttacatgaataggacacctctcggtattgcatca 4007771  T
Q  223 gatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaaggaca 321  Q
    |||||||| ||||||||| |||||| || |||||| || |||||||||||  ||||||| || || |||||||||||||||||||||||||||||||||    
T  4007770 gatcatgtgtgcatgatacacgaccaacgatgttctcggtacctaactagagtagcaaagaatcatacaaggtttaaaatcaaggttacagcaaggaca 4007672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 61 - 322
Target Start/End: Complemental strand, 3985014 - 3984753
Alignment:
Q  61 ctctcccctttgttgggctttgttttttgcttcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtgg 160  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||  ||   || ||||| || ||| ||||| |||||| || ||    
T  3985014 ctctcccctttgttgggctttgttttctgcttcatccttgccgaggactccaaatattgcgacattatggaatttaacatctctacatttgatggtgagg 3984915  T
Q  161 atgatgaagaaaaggatggtgtcagtatcttcatgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcg 260  Q
     ||| |  ||||| |||||||||  ||||| |||||||||| | | || || || |   | ||||||||| |||||||||||||||| ||||||||| |     
T  3984914 gtgacggtgaaaaagatggtgtcgatatctacatgtataggacatgttgctatactgaattagatcatgtgtgcatgatatacgaccaaccatgttctca 3984815  T
Q  261 ctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaaggacaa 322  Q
    ||||||||| |||||||| ||||  ||||||  | |||||||||||||||||||||||||||    
T  3984814 ctacctaaccagcatagccaaaagtcagacacaggttaaaatcaaggttacagcaaggacaa 3984753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 61 - 322
Target Start/End: Complemental strand, 4000135 - 3999874
Alignment:
Q  61 ctctcccctttgttgggctttgttttttgcttcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtgg 160  Q
    |||||| |||||||||||||||||||||||||  ||||||| |||| |||| | | ||||||| |||||| |||||| |||||| |||||||||||| ||    
T  4000135 ctctcctctttgttgggctttgttttttgctttgtccttgctaaggtctccaattattgttacaaaattgtattgaacatcactgcaattgatgttgagg 4000036  T
Q  161 atgatgaagaaaaggatggtgtcagtatcttcatgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcg 260  Q
     |||||  |||||||||||||||  ||| | |||| ||  |  |  | | | || |  |||||||||||| || ||||||||||||||||||| ||| |     
T  4000035 gtgatggtgaaaaggatggtgtcgatatatacatggatgtggatcgtgtttgtaataattcagatcatgtgtgtatgatatacgacccaccattttctca 3999936  T
Q  261 ctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaaggacaa 322  Q
     ||||||||||| ||||| ||||| || |||||||| |||||||||||| ||||||||||||    
T  3999935 gtacctaactagaatagcgaaaaatcatacaaggttcaaaatcaaggttgcagcaaggacaa 3999874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 321
Target Start/End: Complemental strand, 4023123 - 4022830
Alignment:
Q  28 gatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatccttgccaaggactcccaattttgttaccaaa 127  Q
    ||||| |||||| |||||||||||||   ||  |||||||||||| |||||||||||||||||||  ||||||| ||||||  ||| | |||| ||| ||    
T  4023123 gatgacatgattgttgatctctctccacattatctctcccctttgctgggctttgttttttgctttgtccttgctaaggacatccattattgtgaccgaa 4023024  T
Q  128 ttgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcatgtataggtcttttttctctagtttttcagatca 227  Q
    |||||||||| |||||||||| ||||| ||  | ||| || ||||||| ||| |||| ||| | |||| ||||  |   | ||  || |   ||||||||    
T  4023023 ttgaattgaacatcactacaaatgatgctgaaggtgacgatgaaaagggtggcgtcaatatatacatggatagaacacgtctcggtattgcatcagatca 4022924  T
Q  228 tgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaaggaca 321  Q
    ||| |||||||||||||||| ||||| ||| | ||||||||||||||||||||| ||  ||| ||||||||||||||||||||| |||||||||    
T  4022923 tgtgtgcatgatatacgaccaaccattttctcactacctaactagcatagcaaacaataagagaaggtttaaaatcaaggttacggcaaggaca 4022830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 83 - 321
Target Start/End: Complemental strand, 3998919 - 3998681
Alignment:
Q  83 ttttttgcttcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgt 182  Q
    |||||||||||||||||||  |||||| ||||  ||||   |||||||| || || ||||||||||||||||    ||||||||| |||||||| |||||    
T  3998919 ttttttgcttcatccttgctgaggactaccaacattgtgcacaaattgagttcaacatcactacaattgatgacaaggatgatgatgaaaaggacggtgt 3998820  T
Q  183 cagtatcttcatgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaa 282  Q
    |||||| | |||| ||||| |   | ||  || |   ||||||||||| ||||||||| || ||| || |||||| || |||||||||||  |||||||     
T  3998819 cagtatttacatgaataggacacctctcagtattgcatcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagtgtagcaaag 3998720  T
Q  283 aagcagacaaggtttaaaatcaaggttacagcaaggaca 321  Q
    || || |||||||||||||| ||||||||||||||||||    
T  3998719 aatcatacaaggtttaaaattaaggttacagcaaggaca 3998681  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 316
Target Start/End: Complemental strand, 3815533 - 3815439
Alignment:
Q  222 agatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaa 316  Q
    ||||||||||||||||||| | |||| || ||||||  | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  3815533 agatcatgtatgcatgatacaggaccaacgatgttctgggtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaa 3815439  T

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Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 327
Target Start/End: Original strand, 3922309 - 3922416
Alignment:
Q  220 tcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaagga 319  Q
    ||||||||||| || ||||| ||||||| ||| ||||| |   |||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||    
T  3922309 tcagatcatgtgtgtatgatttacgaccaaccttgttctcagcacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcatgga 3922408  T
Q  320 caacaccc 327  Q
    ||| ||||    
T  3922409 caataccc 3922416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 3935669 - 3935767
Alignment:
Q  220 tcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaagg 318  Q
    ||||||||||| || ||||| ||||||| ||| || || |  ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  3935669 tcagatcatgtgtgtatgatttacgaccaaccttgctctcagtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaagg 3935767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 3935474 - 3935545
Alignment:
Q  28 gatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatcctt 99  Q
    ||||| |||||| |||||||||||||  ||   ||||||||||||||||| |||||||||||||| ||||||    
T  3935474 gatgacatgattgttgatctctctccacttcatctctcccctttgttgggttttgttttttgctttatcctt 3935545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 3922120 - 3922185
Alignment:
Q  34 atgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatcctt 99  Q
    |||||| |||||||||||||  ||   ||||||||||||||||| |||||||||||||| ||||||    
T  3922120 atgattgttgatctctctccacttcatctctcccctttgttgggttttgttttttgctttatcctt 3922185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 3807890 - 3807848
Alignment:
Q  276 agcaaaaaagcagacaaggtttaaaatcaaggttacagcaagg 318  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||    
T  3807890 agcaaaaaatcaggcaaggtttaaaatcaaggttacagtaagg 3807848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 3808115 - 3808083
Alignment:
Q  60 cctctcccctttgttgggctttgttttttgctt 92  Q
    ||||||||| |||||||||||||||||||||||    
T  3808115 cctctcccccttgttgggctttgttttttgctt 3808083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 325 - 429
Target Start/End: Complemental strand, 19168021 - 19167917
Alignment:
Q  325 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 424  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||| ||    
T  19168021 cccattgagttcttaatatgctaacactcttcattgcagcagtactaggattgtttacctgatcttcatatctagcaacatgggcaatagccgtgtcaat 19167922  T
Q  425 ctgtg 429  Q
    |||||    
T  19167921 ctgtg 19167917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 380
Target Start/End: Complemental strand, 18761 - 18706
Alignment:
Q  325 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgttt 380  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  18761 cccattgagttcttaatatgcttacactcttcattgaagcagtactaggattgttt 18706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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