View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_high_8 (Length: 426)
Name: NF17775_high_8
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 16312020 - 16312405
Alignment:
| Q |
14 |
agaggataaatccaaaggagttgtatctaagaacactaatttctgagaactcggttcctatttatcataaagtaccgtctaatgttcactttttcctttg |
113 |
Q |
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| T |
16312020 |
agaggataaatccaaaggagttgtatctaagaacactaatgtctgaaaactcggttcctatttatt----------gtctaatgttcactttttccttta |
16312109 |
T |
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| Q |
114 |
agagccttgtcataactgcgttcatgttagcggggttttgaagaggaggagtatgattgtcttggacgtgtgtatccaatttgtgatggcaccggtgaag |
213 |
Q |
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| T |
16312110 |
agagccttgtcataactgcgttcatgttcgcggggttttgaagaggaggagtatgattgtcttggacttgtgtatccaatttgtgatggcaccggtgaag |
16312209 |
T |
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| Q |
214 |
actttttgcattgcttgttttcctgtggtcgcgccttagaggtttggcaccggtgctgccccatttcttagcaccctccacagatattgagcgtaaggat |
313 |
Q |
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| T |
16312210 |
actttttgcattgtttgttttcgtgtggtcgcgccttagaggtttggcaccgatgctgccccatttcttagcaccctccacagatattgagcgtaaggat |
16312309 |
T |
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| Q |
314 |
t-gttgaaaggggcaactagacatggcattattcttgcaattattatttggaatatttggtgttccagaaatatcaatttgtttgagtgaactaaa |
408 |
Q |
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| T |
16312310 |
tggttgaaaggtgcaactagacatggcattattcttgcaattattatttggaatatttggtgttccagaaatatcaatttgtttgagggaactaaa |
16312405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 23924392 - 23924318
Alignment:
| Q |
330 |
tagacatggcattattcttgcaattattatttggaatatttggtgttccagaaatatcaatttgtttgagtgaac |
404 |
Q |
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| T |
23924392 |
tagacatgacattattgttgcaattattatttggaagatttgatgttcgggaaatatttatctgtttgagggaac |
23924318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 291
Target Start/End: Original strand, 19890565 - 19890774
Alignment:
| Q |
81 |
taaagtaccgtctaatgttcactttttcctttgagagccttgtcataactgcgttcatgttagcggggttttgaagaggaggagtatgattgtcttggac |
180 |
Q |
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| T |
19890565 |
taaactaccgtctaatgttcaattttttctttgggagctttgcaattacttagttcttgtttatgtggttttgaaaaggaggagtatgattgtctcagat |
19890664 |
T |
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| Q |
181 |
gtgtgtatccaatttgtgatggcaccggtgaagactttttgcattgcttgttttcctgtggtcgcgccttagaggtttggcaccggtgc-tgccccattt |
279 |
Q |
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| T |
19890665 |
gcatgt--ccaatttatgatggcaccaatgaagactttttgcattatttgtttctttatagttgcgcctcggaggtttggcaccgctgcttgcctcattt |
19890762 |
T |
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| Q |
280 |
cttagcaccctc |
291 |
Q |
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| T |
19890763 |
cttagtaccctc |
19890774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 21421006 - 21421055
Alignment:
| Q |
15 |
gaggataaatccaaaggagttgtatctaagaacactaatttctgagaact |
64 |
Q |
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| T |
21421006 |
gaggataaatatgaaggagttgtatctaaaaacactaatttctcagaact |
21421055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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