View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17775_low_10 (Length: 433)
Name: NF17775_low_10
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_low_10 |
 | |
|
| [»] scaffold0037 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 8059087 - 8059466
Alignment:
| Q |
1 |
aaattgagtgatgagaattgagatggtcctactcttctatacaatgcatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8059087 |
aaattgagtgatgagaattgagatggtcctactcttctatacaatgcatctgtctaagagacattgaagtgaatttgatatttcattttcttctctttac |
8059186 |
T |
|
| Q |
101 |
aagcctgtgaataagacatatcttgaatcaactttgtctcatgacagtcatatcctggattcctatggttgcaattatccctcatatatgtatgtagctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | || |
|
|
| T |
8059187 |
aagcctgtgaataagacatatcttgaatcaacattgtctcatgacagtcatatcctggattcctatggttgcaattattcctcctatatgta----gatc |
8059282 |
T |
|
| Q |
201 |
acacaatcataaatccaatttgtcattcatatcgtgaagctgacactagcaccgatggtttggagaatacaggttatgatttcgttgatggttgaactgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8059283 |
acacaatcataaatccaatttgtcattcatatcgtgaagctgacactagcaccgatggtttggagaatacaggttgtgatttcgttgatggttgaactgt |
8059382 |
T |
|
| Q |
301 |
ttgagtcttgttcgacgcacttaaatcaactattgttttttatattattggaatcgctactcctcgtttaattaccttgtaatc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8059383 |
ttgagtcttgttcgacgcacttaaatcaactattgttttttatattattggaatcgctactcctcgtttaattaccttgtaatc |
8059466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 34900 - 34767
Alignment:
| Q |
1 |
aaattgagtgatgagaattgagatggtcctactcttctatacaatgcatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttac |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34900 |
aaattgagtgatgataattgagatggtcatactctttcata---------tgtctaaaggacattgaagtgaatttgatatttcattttcttctctttac |
34810 |
T |
|
| Q |
101 |
aagcctgtgaataagacatatcttgaatcaactttgtctcatg |
143 |
Q |
| |
|
||| | | ||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
34809 |
aagacgataaatgagacatatcttgaatcaacgttgtcccatg |
34767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 34737 - 34661
Alignment:
| Q |
159 |
attcctatggttgcaattatccctcatatatgtatgtagctcacacaatca--taaatccaatttgtcattcatatcgtgaa |
238 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34737 |
attcatatggttgcaattaaccctcatataggta-gta----acacaatcacataaatccaatttgtcattcatatcgtgaa |
34661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 10428850 - 10428722
Alignment:
| Q |
1 |
aaattgagtgatgagaattgagatggtcctactcttctatacaatgcatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttac |
100 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10428850 |
aaattgagtgatgagaattgagatgctcatactctttcata---------tgtctaaaggacattgaagtgaatttgatatttcattttcttctctttac |
10428760 |
T |
|
| Q |
101 |
aagcctgtgaataagacatatcttgaatcaactttgtc |
138 |
Q |
| |
|
||| | | ||| ||||||||||||||||||| ||||| |
|
|
| T |
10428759 |
aagacgataaatgagacatatcttgaatcaacgttgtc |
10428722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University