View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_low_12 (Length: 425)
Name: NF17775_low_12
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Complemental strand, 34690959 - 34690572
Alignment:
| Q |
10 |
attatactaataccaagattttgtaaaagctctaaaatatagtttttgtcaaaatcgtggtgtcgtgatttcgctatttcatcgtcaatctagacatgta |
109 |
Q |
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| T |
34690959 |
attatactaataccaagattttgtaaaagctctaaaatatagtttttctcaaaatcgtggtggcgtgatttcgctatttcatcgtcaatctagacatgca |
34690860 |
T |
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| Q |
110 |
gttaattttaaggagactaaaattgtcaatttaattatatctgttatttattatcaatggttttgcttattatttgagccaatactattgcctactggct |
209 |
Q |
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| T |
34690859 |
gttaattttaaggtgactaaaattgtcaatttaattatatctgttatttattatcaatggttttgcttattatttgagccaatactattgcctactggct |
34690760 |
T |
|
| Q |
210 |
ctctgtttcaactagctagaacatgagaatctacccttttcttacttggtgttctgaccttgatgccagagaagacagggataagtcattgtctttaaca |
309 |
Q |
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| T |
34690759 |
ctctgtttcaactagctaggacatgagaatctacccttttctttcttggtgttctgaccttgatgccagagaagacagggataagtcattgtctttaaca |
34690660 |
T |
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| Q |
310 |
tggttttcttctcttgccaaaaattgtcagacataaaagacaaaaacagaatgaattgtgtttcattgtatatgcttagcttaaaata |
397 |
Q |
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| T |
34690659 |
tggttttcttctcttgccaaaaattgtcagacataaaagacaaaaacagaatgaattgtgtttcattgtatatgcttagcttaaaata |
34690572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 3675667 - 3675628
Alignment:
| Q |
26 |
gattttgtaaaagctctaaaatatagtttttgtcaaaatc |
65 |
Q |
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| T |
3675667 |
gattttgttaaagctctaaagtatagtttttgtcaaaatc |
3675628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 27858229 - 27858184
Alignment:
| Q |
26 |
gattttgtaaaagctctaaaatatagtttttgtcaaaatcgtggtg |
71 |
Q |
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||||||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
27858229 |
gattttgataaagctctaaaatgtagcttttgtcaaaatcgtggtg |
27858184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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