View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_low_13 (Length: 424)
Name: NF17775_low_13
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 43056361 - 43055973
Alignment:
| Q |
18 |
aaaatgtaatcttaagataagatgtataaataatttgactgaaatattcaacaaaagagatagaatagttgaaactcactctgatgttggattggaagca |
117 |
Q |
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| T |
43056361 |
aaaatttaatcttaagataagatgtataaatagtttgactgaaatattcaacaaaagagatagaatagttgaaactcactctgatgttggattggaagca |
43056262 |
T |
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| Q |
118 |
aggtggaaggaaatattaaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaatgacttcaacaatcaggttgtctaaggcatccat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43056261 |
aggtggaaggaaatattaaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaatgacttcaacaatcaggttgtctaaggcatccat |
43056162 |
T |
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| Q |
218 |
agatggtctgtagaggaaatattatctcgatatatcagatttnnnnnnnnnnnnnnnnnnnncaatgacatgatgtaaaacatgtatgagaattaccctt |
317 |
Q |
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| T |
43056161 |
agatggtctgtagaggaaatattatctcgatatatcagatttaaaaaataaaaatacaaaaacaatgacatgatgtaaaacatgtatgagaattaccctt |
43056062 |
T |
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| Q |
318 |
catactcgggaaataaataaagagcaatattcttgtcggttggtccatccttcttgaagctatcaggccaaacttctgatctgggtagc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43056061 |
catactcgggaaataaataaagagcaatattcttgttggttggtccatccttcttgaagctatcaggccaaacttctgatctgggtagc |
43055973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 44806178 - 44805973
Alignment:
| Q |
35 |
taagatgtataaataatttgactgaaatattcaacaaaagagatagaatagttgaaactcactctgatgttggattggaagcaaggtggaaggaaatatt |
134 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| | |||||| |||| ||||||||||||| |||||||||||||| |||||||| ||| |
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| T |
44806178 |
taagatgtataaataatttgactgaaatattcaactgaagagctggaatagatgaagctcactctgatgtcggattggaagcaagtcagaaggaaaaatt |
44806079 |
T |
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| Q |
135 |
aaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaatgacttcaacaatcaggttgtctaaggcatccatagatggtctgtagagga |
234 |
Q |
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||||| ||| |||||||| || ||||||| ||||||||| | | ||||| ||| ||| ||| ||||| ||||| | |||||| ||| ||||||| |
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| T |
44806078 |
aaaagcactgcattttcagttacaactcttacggcagcttcagtgcaaatgatatcatcaaccagcttgtcaaaggcctttatagataatctatagagga |
44805979 |
T |
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| Q |
235 |
aatatt |
240 |
Q |
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|||||| |
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| T |
44805978 |
aatatt |
44805973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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