View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17775_low_15 (Length: 405)

Name: NF17775_low_15
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17775_low_15
NF17775_low_15
[»] chr1 (38 HSPs)
chr1 (24-347)||(15550592-15550932)
chr1 (23-295)||(48813490-48813781)
chr1 (137-236)||(33616308-33616407)
chr1 (130-238)||(27054521-27054629)
chr1 (130-238)||(34660909-34661018)
chr1 (130-309)||(46602596-46602787)
chr1 (142-238)||(15551338-15551434)
chr1 (93-236)||(46602554-46602702)
chr1 (137-231)||(50593085-50593179)
chr1 (137-238)||(27055086-27055188)
chr1 (164-238)||(48814733-48814807)
chr1 (137-235)||(46602000-46602099)
chr1 (168-238)||(34661457-34661528)
chr1 (168-238)||(48827014-48827085)
chr1 (347-389)||(48813383-48813425)
chr1 (30-71)||(2017739-2017780)
chr1 (30-71)||(24134679-24134720)
chr1 (250-338)||(27055211-27055301)
chr1 (30-71)||(34702368-34702409)
chr1 (266-338)||(46601882-46601957)
chr1 (30-71)||(47651871-47651912)
chr1 (30-71)||(49619971-49620012)
chr1 (30-71)||(50011506-50011547)
chr1 (33-69)||(4684235-4684271)
chr1 (290-343)||(27054457-27054513)
chr1 (33-83)||(27054677-27054727)
chr1 (250-339)||(33616190-33616282)
chr1 (30-71)||(7438620-7438661)
chr1 (30-71)||(10123108-10123148)
chr1 (30-71)||(15417872-15417913)
chr1 (30-71)||(30735827-30735868)
chr1 (30-71)||(35527390-35527431)
chr1 (30-71)||(39304258-39304299)
chr1 (30-71)||(43109293-43109334)
chr1 (30-71)||(48497268-48497309)
chr1 (31-71)||(8893859-8893899)
chr1 (93-121)||(34661033-34661061)
chr1 (31-71)||(40061442-40061482)
[»] chr5 (35 HSPs)
chr5 (137-236)||(3517538-3517637)
chr5 (130-238)||(36037684-36037792)
chr5 (130-234)||(7672040-7672144)
chr5 (130-238)||(12375576-12375684)
chr5 (137-238)||(7671549-7671650)
chr5 (130-231)||(11784668-11784769)
chr5 (130-238)||(30486899-30487008)
chr5 (137-238)||(3518078-3518182)
chr5 (137-231)||(17086829-17086923)
chr5 (144-231)||(17087650-17087737)
chr5 (130-236)||(16438245-16438351)
chr5 (137-230)||(11785195-11785288)
chr5 (130-236)||(16437711-16437817)
chr5 (171-238)||(1666312-1666379)
chr5 (168-238)||(30487444-30487515)
chr5 (168-238)||(12375009-12375079)
chr5 (170-234)||(36037158-36037222)
chr5 (168-238)||(15696638-15696708)
chr5 (192-238)||(15696057-15696103)
chr5 (257-309)||(12374871-12374923)
chr5 (30-72)||(43227864-43227906)
chr5 (130-171)||(15696099-15696140)
chr5 (30-71)||(31250146-31250187)
chr5 (30-71)||(38503312-38503353)
chr5 (30-72)||(15470676-15470718)
chr5 (30-71)||(5039680-5039720)
chr5 (30-71)||(12375467-12375508)
chr5 (34-71)||(13576322-13576359)
chr5 (30-71)||(17077360-17077401)
chr5 (35-71)||(1984249-1984285)
chr5 (93-121)||(7671996-7672024)
chr5 (93-121)||(11784784-11784812)
chr5 (93-121)||(16437831-16437859)
chr5 (93-121)||(30487022-30487050)
chr5 (93-121)||(36037643-36037671)
[»] chr3 (39 HSPs)
chr3 (137-236)||(6177835-6177934)
chr3 (137-238)||(33544002-33544103)
chr3 (130-234)||(31903056-31903160)
chr3 (130-234)||(33543536-33543640)
chr3 (130-237)||(23156082-23156189)
chr3 (137-231)||(53668897-53668991)
chr3 (130-238)||(23156329-23156438)
chr3 (137-231)||(53685323-53685417)
chr3 (137-218)||(53733612-53733693)
chr3 (168-238)||(30163049-30163119)
chr3 (168-238)||(36590839-36590909)
chr3 (169-238)||(23156836-23156905)
chr3 (168-238)||(35343952-35344023)
chr3 (168-238)||(37472573-37472644)
chr3 (130-204)||(53734112-53734186)
chr3 (188-238)||(36590279-36590329)
chr3 (168-240)||(23155584-23155654)
chr3 (130-182)||(35343466-35343518)
chr3 (192-238)||(30162547-30162593)
chr3 (30-121)||(30162604-30162697)
chr3 (196-234)||(53734206-53734244)
chr3 (30-71)||(2259156-2259197)
chr3 (30-71)||(25165439-25165480)
chr3 (30-71)||(34225194-34225235)
chr3 (30-71)||(36590389-36590430)
chr3 (30-71)||(39739273-39739314)
chr3 (30-72)||(27817122-27817164)
chr3 (30-68)||(47864638-47864676)
chr3 (33-71)||(50381713-50381751)
chr3 (30-71)||(1084083-1084124)
chr3 (30-71)||(11483612-11483653)
chr3 (30-71)||(33528260-33528301)
chr3 (30-71)||(46247259-46247300)
chr3 (30-71)||(55426113-55426154)
chr3 (93-121)||(23156038-23156066)
chr3 (93-121)||(23156453-23156481)
chr3 (93-121)||(35343533-35343561)
chr3 (93-121)||(36590336-36590364)
chr3 (289-340)||(53669061-53669115)
[»] chr8 (27 HSPs)
chr8 (30-342)||(10161672-10162004)
chr8 (130-238)||(11918901-11919010)
chr8 (137-231)||(32328327-32328421)
chr8 (168-306)||(13904308-13904458)
chr8 (168-238)||(13906209-13906279)
chr8 (168-236)||(11919444-11919513)
chr8 (137-204)||(10162270-10162338)
chr8 (188-238)||(13906781-13906831)
chr8 (145-236)||(40808043-40808142)
chr8 (30-121)||(13906681-13906774)
chr8 (270-342)||(10161551-10161627)
chr8 (30-71)||(1032569-1032610)
chr8 (30-71)||(4259858-4259899)
chr8 (30-71)||(41454882-41454923)
chr8 (30-71)||(41845484-41845525)
chr8 (30-61)||(280051-280082)
chr8 (30-61)||(635770-635801)
chr8 (30-61)||(821573-821604)
chr8 (30-69)||(38544979-38545018)
chr8 (30-68)||(38289290-38289328)
chr8 (30-71)||(30466678-30466719)
chr8 (30-71)||(36103977-36104018)
chr8 (30-71)||(44828488-44828529)
chr8 (35-71)||(3311439-3311475)
chr8 (41-73)||(11052650-11052682)
chr8 (30-70)||(39104607-39104647)
chr8 (33-69)||(43456710-43456746)
[»] chr2 (20 HSPs)
chr2 (130-238)||(4632160-4632268)
chr2 (130-238)||(32342816-32342925)
chr2 (137-231)||(3402269-3402363)
chr2 (157-238)||(27299361-27299442)
chr2 (168-238)||(32342293-32342364)
chr2 (137-231)||(3402966-3403066)
chr2 (168-238)||(4631713-4631781)
chr2 (165-222)||(30777721-30777778)
chr2 (30-72)||(34107493-34107535)
chr2 (30-71)||(16403524-16403565)
chr2 (30-71)||(40203334-40203375)
chr2 (30-68)||(6866510-6866548)
chr2 (351-381)||(44249718-44249748)
chr2 (30-71)||(11069400-11069441)
chr2 (30-71)||(19843418-19843459)
chr2 (30-71)||(25553200-25553241)
chr2 (30-71)||(31149156-31149197)
chr2 (93-121)||(4632118-4632146)
chr2 (93-121)||(30777793-30777821)
chr2 (93-121)||(32342771-32342799)
[»] chr4 (28 HSPs)
chr4 (137-231)||(20378874-20378968)
chr4 (130-231)||(45630317-45630418)
chr4 (137-231)||(47281225-47281319)
chr4 (137-238)||(35012244-35012345)
chr4 (137-234)||(45282251-45282348)
chr4 (137-238)||(45630832-45630933)
chr4 (130-238)||(39719879-39719986)
chr4 (130-234)||(45281769-45281873)
chr4 (130-234)||(9800028-9800132)
chr4 (168-238)||(55537034-55537104)
chr4 (168-238)||(39719449-39719519)
chr4 (168-230)||(13209900-13209962)
chr4 (167-236)||(20320875-20320944)
chr4 (271-340)||(20321011-20321083)
chr4 (194-238)||(9799902-9799946)
chr4 (30-68)||(8716556-8716594)
chr4 (188-238)||(13210320-13210370)
chr4 (170-212)||(20320604-20320646)
chr4 (30-121)||(13210219-13210313)
chr4 (30-71)||(16556450-16556491)
chr4 (30-71)||(40407016-40407057)
chr4 (30-71)||(46283121-46283162)
chr4 (30-71)||(51974746-51974787)
chr4 (30-71)||(19687649-19687690)
chr4 (30-71)||(36993040-36993081)
chr4 (30-71)||(52366206-52366247)
chr4 (93-121)||(45281888-45281916)
chr4 (93-121)||(45630433-45630461)
[»] chr7 (23 HSPs)
chr7 (137-238)||(25964728-25964829)
chr7 (130-234)||(25965243-25965347)
chr7 (137-238)||(36388940-36389041)
chr7 (150-234)||(34238994-34239078)
chr7 (164-234)||(34238074-34238144)
chr7 (30-71)||(23824646-23824687)
chr7 (30-71)||(28712367-28712408)
chr7 (30-71)||(40273820-40273861)
chr7 (30-71)||(42554633-42554674)
chr7 (30-71)||(48433765-48433806)
chr7 (31-71)||(36528275-36528315)
chr7 (30-71)||(26456060-26456101)
chr7 (30-71)||(27454010-27454051)
chr7 (30-71)||(31793467-31793508)
chr7 (30-71)||(42338302-42338343)
chr7 (30-71)||(46266667-46266708)
chr7 (30-71)||(48619796-48619837)
chr7 (31-71)||(1575693-1575733)
chr7 (30-58)||(22156110-22156138)
chr7 (30-58)||(22212025-22212053)
chr7 (93-121)||(34238751-34238779)
chr7 (93-121)||(36388535-36388563)
chr7 (35-71)||(44986593-44986629)
[»] scaffold0108 (2 HSPs)
scaffold0108 (137-231)||(17904-17998)
scaffold0108 (137-231)||(18613-18707)
[»] chr6 (23 HSPs)
chr6 (130-238)||(30260487-30260596)
chr6 (130-238)||(20821837-20821948)
chr6 (137-236)||(173744-173843)
chr6 (168-238)||(15716598-15716668)
chr6 (168-309)||(13000530-13000681)
chr6 (188-238)||(15717170-15717220)
chr6 (130-204)||(5948729-5948798)
chr6 (168-234)||(20821333-20821397)
chr6 (30-71)||(30422163-30422204)
chr6 (196-236)||(5948663-5948703)
chr6 (202-238)||(5949139-5949175)
chr6 (30-72)||(24794950-24794992)
chr6 (30-71)||(6228315-6228356)
chr6 (30-71)||(15717068-15717109)
chr6 (30-68)||(21874276-21874314)
chr6 (30-71)||(4854361-4854402)
chr6 (30-71)||(17216957-17216998)
chr6 (30-67)||(19748102-19748139)
chr6 (244-309)||(20821966-20822031)
chr6 (30-71)||(25045739-25045780)
chr6 (168-225)||(30260961-30261021)
chr6 (33-77)||(7927127-7927171)
chr6 (93-121)||(20821795-20821823)
[»] scaffold0339 (1 HSPs)
scaffold0339 (137-231)||(13008-13102)
[»] scaffold0018 (2 HSPs)
scaffold0018 (188-238)||(121955-122005)
scaffold0018 (30-71)||(121854-121895)
[»] scaffold0001 (1 HSPs)
scaffold0001 (30-71)||(419711-419752)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 24 - 347
Target Start/End: Complemental strand, 15550932 - 15550592
Alignment:
Q  24 cgtgcccacatattgtacattatcccttaccaaatgagataagctcatatagaccctatannnnnnnnnataagacttatattaaaaaaacaaaaatgnn 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||          |||||||||||||||||||||||||||||      
T  15550932 cgtgcccacatattgtgcattatcccttaccaaatgagataagctcatggggaccctat--ttttttttataagacttatattaaaaaaacaaaaatgat 15550835  T
Q  124 nnnnnn----agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaa 219  Q
              |||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  15550834 ttttttttttagggtacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactggtttaaaaaatggtatatatattattggatgcgaaaa 15550735  T
Q  220 ttaacatcaaatgtacatt------------agagagaatgacaatatcccatacgcgcctgattcgactccctctagaagcaaaattaaaattttttct 307  Q
    |||||||||||||||||||            | |||||||| |||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||    
T  15550734 ttaacatcaaatgtacattggcttagtggcaacagagaatggcaatgtcccatacgcgcctgatttgactccctctgggagcaaaattaaaattttttct 15550635  T
Q  308 ca---ttctgaatacattacaggacaaaacaaaaaacggatgg 347  Q
    ||   ||||||||||| ||||||||||||||||||||||||||    
T  15550634 caattttctgaatacactacaggacaaaacaaaaaacggatgg 15550592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 48813781 - 48813490
Alignment:
Q  23 ccgtgcccacatattgtacattatcccttaccaaatgagataagctcatatagaccctatannnnnnnnn--ataagacttatattaaaaaaacaaaaat 120  Q
    ||||||||||||||| | |||||||||||||||||||| ||||||||||   |||||||||           ||||||||||||||||||||||||||||    
T  48813781 ccgtgcccacatattatgcattatcccttaccaaatgaaataagctcatggggaccctatatttttttttttataagacttatattaaaaaaacaaaaat 48813682  T
Q  121 gnnnnnnnn-----agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgca 215  Q
    |             |||||| |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  48813681 gatttttttttttgagggaacaaaaatgaaaaattggatggttcatgtctcatggtgtgtgaaactgattttaaaaatggtatatatattattggatgcg 48813582  T
Q  216 aaaattaacatcaaatgtaca-----ttag-------agagaatgacaatatcccatacgcgcctgattcgactccctctagaagcaaaatt 295  Q
    |||||||||||||||||||||     ||||       |||||||| |||| || |||||||||||||||||||||||||| | |||||||||    
T  48813581 aaaattaacatcaaatgtacaatgccttagtggcaacagagaatggcaatgtctcatacgcgcctgattcgactccctctgggagcaaaatt 48813490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 33616407 - 33616308
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33616407 aaaaatgaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 33616308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 27054629 - 27054521
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  27054629 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcgaaaataaacatcaa 27054530  T
Q  230 atgtacatt 238  Q
    |||||||||    
T  27054529 atgtacatt 27054521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 34661018 - 34660909
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaa-attaacatca 228  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  34661018 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcaaaatattaacatca 34660919  T
Q  229 aatgtacatt 238  Q
    ||||||||||    
T  34660918 aatgtacatt 34660909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 130 - 309
Target Start/End: Original strand, 46602596 - 46602787
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| | |||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  46602596 agggaacacaaatgaaaaattggttggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcgaaaattatcatcaa 46602695  T
Q  230 atgtacattag------------agagaatgacaatatcccatacgcgcctgattcgactccctctagaagcaaaattaaaattttttctca 309  Q
    ||||||| |||            | |||||  |||| ||||||| ||||||  ||||||||||||| | ||||||||| |||||||||||||    
T  46602696 atgtacactagtttaatggcaaaacagaatagcaatgtcccataggcgcctcgttcgactccctctgggagcaaaattgaaattttttctca 46602787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 15551338 - 15551434
Alignment:
Q  142 tgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  15551338 tgaaaaactggatggttcatgtctcatggtgtgtgaaactggttttaaaattggtatatatattattggatgcgaaaattaacatcaaatgtacatt 15551434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 46602554 - 46602702
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg-----nnnnnnnnagggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggtttt 187  Q
    |||||||||||||||||||||||||||||             |||||| | |||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  46602554 ataagacttatattaaaaaaacaaaaatgaattatttttttgagggaacacaaatgaaaaattggttggttcatgcctcatggtgtgtgaatctggtttt 46602653  T
Q  188 aaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  46602654 aaaaatggtatatatattattggatgcgaaaattatcatcaaatgtaca 46602702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 50593179 - 50593085
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  50593179 aaaaatgaaaaattggatggttcatgcctaatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaacattaatatcaaat 50593085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 27055086 - 27055188
Alignment:
Q  137 aaaaatgaaaaa-ttggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtac 235  Q
    |||||||||||| |||||||||||||  |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  27055086 aaaaatgaaaaagttggatggttcatgtctcatggtgtttgaatctggttttaaaaatggtatatatattattggatgcgaaaattaacatcaaatgtgc 27055185  T
Q  236 att 238  Q
    |||    
T  27055186 att 27055188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 48814733 - 48814807
Alignment:
Q  164 ctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48814733 ctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcgaaaattaacatcaaatgtacatt 48814807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 46602099 - 46602000
Alignment:
Q  137 aaaaatgaaaaa-ttggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtac 235  Q
    |||||||||||| ||| ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  46602099 aaaaatgaaaaagttgcatggttcatgcctcatggtgtgtgaatctgattttaaaaatggtatatatattattggatgcgaaaattaatatcaaatgtac 46602000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 34661457 - 34661528
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34661457 tggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaaattaacatcaaatgtacatt 34661528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 48827085 - 48827014
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  48827085 tggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaaattaatatcaaatgtacatt 48827014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 48813425 - 48813383
Alignment:
Q  347 ggaaaattgggtatatctgtcaatcagtttttgtccatctttg 389  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48813425 ggaaaattgggtatatctgtcaatcagtttttgtccatctttg 48813383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 2017739 - 2017780
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  2017739 cacatattgtgcattatcccttaccaaatgagctaagctcat 2017780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 24134679 - 24134720
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  24134679 cacatattgtgcattatcccttaccaaatgagctaagctcat 24134720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 27055211 - 27055301
Alignment:
Q  250 caatatcccatacgcgcctgattcgactccctctagaagcaaaattaaaattttttctca---ttctgaatacattacaggacaaaacaaaa 338  Q
    |||| |||||||| |||||| ||||||||||| | | |||||||||||||||||||||||   || | |||||| |||| ||||||||||||    
T  27055211 caatgtcccatacacgcctg-ttcgactccctttgggagcaaaattaaaattttttctcaattttttaaatacactacaagacaaaacaaaa 27055301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 34702368 - 34702409
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  34702368 cacatattgtgcattatcccttaccaaatgagctaagctcat 34702409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 46601957 - 46601882
Alignment:
Q  266 cctgattcgactccctctagaagcaaaattaaaattttttctca---ttctgaatacattacaggacaaaacaaaa 338  Q
    |||| ||||||||||| | ||| ||||||| |||||||||||||   ||||||||||| |||||||||||| ||||    
T  46601957 cctgcttcgactccctttggaaacaaaattgaaattttttctcaattttctgaatacactacaggacaaaaaaaaa 46601882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 47651912 - 47651871
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  47651912 cacatattgtgcattatcccttaccaaatgagctaagctcat 47651871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 49620012 - 49619971
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  49620012 cacatattgtgcattatcccttaccaaatgagctaagctcat 49619971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 50011547 - 50011506
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  50011547 cacatattgtgcattatcccttaccaaatgagctaagctcat 50011506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 4684235 - 4684271
Alignment:
Q  33 atattgtacattatcccttaccaaatgagataagctc 69  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4684235 atattgtacattatcccttaccaaatgaggtaagctc 4684271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 27054513 - 27054457
Alignment:
Q  290 aaaattaaaattttttctca---ttctgaatacattacaggacaaaacaaaaaacgg 343  Q
    |||||| |||||||||||||   || |||||||| ||||||||||||||||||||||    
T  27054513 aaaattgaaattttttctcaattttttgaatacactacaggacaaaacaaaaaacgg 27054457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 27054727 - 27054677
Alignment:
Q  33 atattgtacattatcccttaccaaatgagataagctcatatagaccctata 83  Q
    ||||||| ||||||||||||||||||||| |||||||||   |||||||||    
T  27054727 atattgtgcattatcccttaccaaatgagctaagctcatggggaccctata 27054677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 33616282 - 33616190
Alignment:
Q  250 caatatcccatacgcgcctgattcgactccctctagaagcaaaattaaaattttttctca---ttctgaatacattacaggacaaaacaaaaa 339  Q
    |||| ||||| ||||| ||| ||||| | ||||| | | ||||||| |||||||||||||   ||||| ||||| ||||||||||||||||||    
T  33616282 caatgtcccacacgcgtctggttcgatttcctctgggaacaaaattgaaattttttctcaattttctggatacactacaggacaaaacaaaaa 33616190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 7438661 - 7438620
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  7438661 cacaaattgtgcattatcccttaccaaatgagctaagctcat 7438620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 10123108 - 10123148
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  10123108 cacatattgta-attatcccttaccaaatgagttaagctcat 10123148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 15417872 - 15417913
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| |||||||| |||||||||||| |||||||||    
T  15417872 cacatattgtgcattatcctttaccaaatgagctaagctcat 15417913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 30735868 - 30735827
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  30735868 cacaaattgtgcattatcccttaccaaatgagttaagctcat 30735827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 35527390 - 35527431
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||| ||||    
T  35527390 cacatattgtgcattatcccttaccaaatgagctaagttcat 35527431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 39304258 - 39304299
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||| | ||||||||||||||||||||| |||||||||    
T  39304258 cacatattatgcattatcccttaccaaatgagctaagctcat 39304299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 43109293 - 43109334
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||| | ||||||||||||||||||||| |||||||||    
T  43109293 cacatattttgcattatcccttaccaaatgagctaagctcat 43109334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 48497268 - 48497309
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| ||| |||||    
T  48497268 cacatattgtgcattatcccttaccaaatgagctaaactcat 48497309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 8893899 - 8893859
Alignment:
Q  31 acatattgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||||| ||||||||||||||||||||  |||||||||    
T  8893899 acatattgtgcattatcccttaccaaatgaactaagctcat 8893859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 34661061 - 34661033
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  34661061 ataagacttatattaaaaaaacaaaaatg 34661033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 40061482 - 40061442
Alignment:
Q  31 acatattgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||||| || |||||||||||||||||| |||||||||    
T  40061482 acatattgtgcactatcccttaccaaatgagttaagctcat 40061442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 3517637 - 3517538
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3517637 aaaaatgaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 3517538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 36037684 - 36037792
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  36037684 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaattaacatcaa 36037783  T
Q  230 atgtacatt 238  Q
    |||||||||    
T  36037784 atgtacatt 36037792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 7672040 - 7672144
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  7672040 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaattaacatcaa 7672139  T
Q  230 atgta 234  Q
    |||||    
T  7672140 atgta 7672144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 12375576 - 12375684
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  12375576 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgcgaaactgatttaaaaaatggtatatatattattggatgcgaaaattaacatcaa 12375675  T
Q  230 atgtacatt 238  Q
    |||||||||    
T  12375676 atgtacatt 12375684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 7671650 - 7671549
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  7671650 aaaaatgaaaaactggatggttcatgcctcatggtgtgtgaaactggttttaaaaagggtatatatattattagatgcaaaaattaacatcaaatttaca 7671551  T
Q  237 tt 238  Q
    ||    
T  7671550 tt 7671549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 11784769 - 11784668
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  11784769 agggaacaaaaatgaaaaattgaatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaattaacatcaa 11784670  T
Q  230 at 231  Q
    ||    
T  11784669 at 11784668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 30487008 - 30486899
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatca 228  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||  |||||||||||||    
T  30487008 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgcaaaattaacatca 30486909  T
Q  229 aatgtacatt 238  Q
    ||| ||||||    
T  30486908 aatatacatt 30486899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 3518078 - 3518182
Alignment:
Q  137 aaaaatgaaaaattggatggttcatt---cctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgt 233  Q
    |||||||||||||||||||||||||    ||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3518078 aaaaatgaaaaattggatggttcatcatgccttatggtgtgtgaatctggttttaaaaatggtatatatattattggatacaaaaattaacatcaaatgt 3518177  T
Q  234 acatt 238  Q
    |||||    
T  3518178 acatt 3518182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 17086923 - 17086829
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    ||||||||||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17086923 aaaaatgaaaaattgaatagttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaacattaacatcaaat 17086829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 17087650 - 17087737
Alignment:
Q  144 aaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17087650 aaaaattggatggttcatgcctcatgatgtgtgaatctggttttaaaaatggtatatatattattggatgcaaacattaacatcaaat 17087737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 16438245 - 16438351
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||  ||||||    
T  16438245 agggaacaaaaatgaaatattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcgaaatttttcatcaa 16438344  T
Q  230 atgtaca 236  Q
    || ||||    
T  16438345 atctaca 16438351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 11785195 - 11785288
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaa 230  Q
    |||||||||||| || ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  11785195 aaaaatgaaaaactgcatggttcatgccttatggtgtgtgaaactggttttaaaaagggtatatatattattagatgcaaaaattaacatcaaa 11785288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 16437817 - 16437711
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| |||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||| ||| ||||||    
T  16437817 agggaacaaaaatgaaatattggatggttcatgcctcatggtgtgtgaatctgattttaaaaatgatatatatattattggatgcgaaatttatcatcaa 16437718  T
Q  230 atgtaca 236  Q
    || ||||    
T  16437717 atctaca 16437711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 1666379 - 1666312
Alignment:
Q  171 tgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  1666379 tgtgtgaaactggttttaaaaagggtatatatattattagatgcaaaaattaacatcaaatgtacatt 1666312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 30487444 - 30487515
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30487444 tggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaaattaacatcaaatgtacatt 30487515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 12375079 - 12375009
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||||    
T  12375079 tggtgtgtgaaactggttttaaaaagggtatatatattattagatgcgaaaattaacatcaaatatacatt 12375009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 36037222 - 36037158
Alignment:
Q  170 gtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgta 234  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  36037222 gtgtgtgaaactgtttttaaaaagggtatatatattattagatgcaaaaattaacatcaaatgta 36037158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 15696638 - 15696708
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||  |||||||||||||||||||||||    
T  15696638 tggtgtgtgaaactggtattaaaaagggtatatatattattagatgtgaaaattaacatcaaatgtacatt 15696708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 15696103 - 15696057
Alignment:
Q  192 atggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  15696103 atggtatatatattattggatgcgaaaattaacatcaaatgcacatt 15696057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 12374923 - 12374871
Alignment:
Q  257 ccatacgcgcctgattcgactccctctagaagcaaaattaaaattttttctca 309  Q
    ||||||||||||| |||||||||| |||| ||||||||| |||||||||||||    
T  12374923 ccatacgcgcctggttcgactccccctaggagcaaaattgaaattttttctca 12374871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 43227906 - 43227864
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcata 72  Q
    |||||||||| ||||||||||||||||||||| ||||||||||    
T  43227906 cacatattgtgcattatcccttaccaaatgagctaagctcata 43227864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 15696140 - 15696099
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggt 171  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  15696140 agggaacaaaaatgaaaaattggatggttcatgcctcatggt 15696099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 31250187 - 31250146
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  31250187 cacatattgtgcattatcccttaccaaatgagctaagctcat 31250146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 38503312 - 38503353
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  38503312 cacatattgtgcattatcccttaccaaatgagctaagctcat 38503353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 15470676 - 15470718
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcata 72  Q
    |||||||||| ||||||||||||||||||||  ||||||||||    
T  15470676 cacatattgtgcattatcccttaccaaatgaattaagctcata 15470718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 5039720 - 5039680
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  5039720 cacatattgtacattatcc-ttaccaaatgagttaagctcat 5039680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 12375467 - 12375508
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| |||||||| |||||||||||| |||||||||    
T  12375467 cacatattgtgcattatccattaccaaatgagctaagctcat 12375508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 13576359 - 13576322
Alignment:
Q  34 tattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  13576359 tattgtgcattatcccttaccaaatgagttaagctcat 13576322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 17077401 - 17077360
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  17077401 cacaaattgtgcattatcccttaccaaatgagctaagctcat 17077360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 1984249 - 1984285
Alignment:
Q  35 attgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  1984249 attgtgcattatcccttaccaaatgagttaagctcat 1984285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 7671996 - 7672024
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  7671996 ataagacttatattaaaaaaacaaaaatg 7672024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 11784812 - 11784784
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  11784812 ataagacttatattaaaaaaacaaaaatg 11784784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 16437859 - 16437831
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  16437859 ataagacttatattaaaaaaacaaaaatg 16437831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 30487050 - 30487022
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  30487050 ataagacttatattaaaaaaacaaaaatg 30487022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 36037643 - 36037671
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  36037643 ataagacttatattaaaaaaacaaaaatg 36037671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 6177835 - 6177934
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6177835 aaaaatgaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 6177934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 33544002 - 33544103
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  33544002 aaaaatgaaaaactggatggttcatgcctcatggtgtgtgaaactggttttaaaaagggtatatatattattagatgcaaaaattaacatcaaatgtaca 33544101  T
Q  237 tt 238  Q
    ||    
T  33544102 tt 33544103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 31903056 - 31903160
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  31903056 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaattaacatcaa 31903155  T
Q  230 atgta 234  Q
    |||||    
T  31903156 atgta 31903160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 33543640 - 33543536
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  33543640 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaattaacatcaa 33543541  T
Q  230 atgta 234  Q
    |||||    
T  33543540 atgta 33543536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 23156082 - 23156189
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  23156082 agggaacaaaaatgaaaaattggatggttgatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaattaacatcaa 23156181  T
Q  230 atgtacat 237  Q
    ||||||||    
T  23156182 atgtacat 23156189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 53668897 - 53668991
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53668897 aaaaatgaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaacattaacatcaaat 53668991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 23156438 - 23156329
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggtttt-aaaaatggtatatatattattggatgcaaaaattaacatca 228  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||    
T  23156438 agggaacaaaaatgaaaaattggatggttgatgcctcatggtgtgtgaaactgattttaaaaaatggtatatatatttttggatgcgaaaattaacatca 23156339  T
Q  229 aatgtacatt 238  Q
    ||||||||||    
T  23156338 aatgtacatt 23156329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 53685323 - 53685417
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  53685323 aaaaatgaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatgatatatatattattggatgcaaacattaacataaaat 53685417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 53733693 - 53733612
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaa 218  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  53733693 aaaaatgaaaaactggatggttcatgcctcatggtgtgtgaaactggttttaaaaagggtatatatattattagatgcaaaa 53733612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 30163049 - 30163119
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  30163049 tggtgtgtgaaactggttttaaaaagggtatatatattattagatgcgaaaattaacatcaaatgtacatt 30163119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 36590839 - 36590909
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  36590839 tggtgtgtgaaactggttttaaaaagggtatatatattattagatgcgaaaattaacatcaaatgtacatt 36590909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 23156836 - 23156905
Alignment:
Q  169 ggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  23156836 ggtgtgtgaaactggttttaaaaagggtatatatattattagatgcgaaaattaacatcaaatgtacatt 23156905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 35343952 - 35344023
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35343952 tggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaaattaacatcaaatgtacatt 35344023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 37472573 - 37472644
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  37472573 tggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaaattaatatcaaatgtacatt 37472644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 53734112 - 53734186
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatat 204  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||| |||||||||    
T  53734112 agggaacaaaaatgaaaaattgaatggttcatgcctcatggtgtgtgaaactgatttaaaaaatgatatatatat 53734186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 36590329 - 36590279
Alignment:
Q  188 aaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36590329 aaaaatggtatatatattattggatgcgaaaattaacatcaaatgtacatt 36590279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 23155654 - 23155584
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacattag 240  Q
    ||||||||||||||||||||||||| |||||||||  |||| ||||| ||||||||||| |||||||||||||    
T  23155654 tggtgtgtgaaactggttttaaaaagggtatatat--tattagatgcgaaaattaacattaaatgtacattag 23155584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 35343518 - 35343466
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactg 182  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  35343518 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactg 35343466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 30162593 - 30162547
Alignment:
Q  192 atggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  30162593 atggtatatatattattggatgcgaaaattaacatcaaatgtacatt 30162547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 30162697 - 30162604
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcatatagaccc--tatannnnnnnnnataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||| ||||||||||||||||||||| |||||||||   |||||  ||||         |||||||||||||||||||||||||||||    
T  30162697 cacatattgtgcattatcccttaccaaatgagctaagctcatggggaccctatatatttttttttataagacttatattaaaaaaacaaaaatg 30162604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 53734206 - 53734244
Alignment:
Q  196 tatatatattattggatgcaaaaattaacatcaaatgta 234  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  53734206 tatatatattattggatgcgaaaattaacatcaaatgta 53734244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 2259197 - 2259156
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  2259197 cacatattgtgcattatcccttaccaaatgagctaagctcat 2259156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 25165480 - 25165439
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  25165480 cacatattgtgcattatcccttaccaaatgagctaagctcat 25165439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 34225235 - 34225194
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  34225235 cacatattgtgcattatcccttaccaaatgagctaagctcat 34225194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 36590430 - 36590389
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||||||||||||||||||||||||| ||| |||||    
T  36590430 cacatattgtacattatcccttaccaaatgagctaatctcat 36590389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 39739314 - 39739273
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  39739314 cacatattgtgcattatcccttaccaaatgagctaagctcat 39739273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 27817122 - 27817164
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcata 72  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||    
T  27817122 cacaaattgtgcattatcccttaccaaatgaggtaagctcata 27817164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 47864676 - 47864638
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagct 68  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  47864676 cacatattgtgcattatcccttaccaaatgagctaagct 47864638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 50381751 - 50381713
Alignment:
Q  33 atattgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  50381751 atattgtgcattatcccttaccaaatgagttaagctcat 50381713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 1084083 - 1084124
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||||||||||||||| ||| |||||||| |||||||||    
T  1084083 cacatattgtacattatcctttaacaaatgagctaagctcat 1084124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 11483653 - 11483612
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||| | ||||||||||||||||||||| |||||||||    
T  11483653 cacatattttgcattatcccttaccaaatgagctaagctcat 11483612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 33528260 - 33528301
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  33528260 cacaaattgtgcattatcccttaccaaatgagctaagctcat 33528301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 46247300 - 46247259
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  46247300 cacaaattgtgcattatcccttaccaaatgagctaagctcat 46247259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 55426154 - 55426113
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| |||||||| |||||||||||| |||||||||    
T  55426154 cacatattgtgcattatcctttaccaaatgagctaagctcat 55426113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 23156038 - 23156066
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  23156038 ataagacttatattaaaaaaacaaaaatg 23156066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 23156481 - 23156453
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  23156481 ataagacttatattaaaaaaacaaaaatg 23156453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 35343561 - 35343533
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  35343561 ataagacttatattaaaaaaacaaaaatg 35343533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 36590364 - 36590336
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  36590364 ataagacttatattaaaaaaacaaaaatg 36590336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 53669061 - 53669115
Alignment:
Q  289 caaaattaaaattttttctca---ttctgaatacattacaggacaaaacaaaaaa 340  Q
    ||||||| |||||||||||||   ||||||||||| |||||||||||| ||||||    
T  53669061 caaaattgaaattttttctcaattttctgaatacactacaggacaaaaaaaaaaa 53669115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 30 - 342
Target Start/End: Complemental strand, 10162004 - 10161672
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcatatagaccctatannnnnnnnnat---aagacttatattaaaaaaacaaaaatgnnnnn 126  Q
    |||||||||| ||||||||||||||| ||||| |||||||||   |||||||||         ||   |||||||||||||||||||||||||||         
T  10162004 cacatattgtgcattatcccttaccagatgagctaagctcatggggaccctatatttagttttattataagacttatattaaaaaaacaaaaatgaattt 10161905  T
Q  127 nnn---agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaa 223  Q
          |||||| |||||||||||||| |||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  10161904 ttttttagggaacaaaaatgaaaaattagatgattcatgcctcatggtgtgtgaatctggttttaaaattggtatatatattattggatgcgaaaattaa 10161805  T
Q  224 catcaaatgtaca-----ttag-------agagaatgacaatatcccatacgcgcctgattcgactccctctagaagcaaaattaaaattttttctca-- 309  Q
    |||||||||||||     ||||       | |||||  |||| || |||| ||||||| || |||| ||||| | |||||||||||||||||||||||      
T  10161804 catcaaatgtacactgacttagtggcaaaacagaatagcaatgtctcataggcgcctggtttgact-cctctgggagcaaaattaaaattttttctcaat 10161706  T
Q  310 -ttctgaatacattacaggacaaaacaaaaaacg 342  Q
     ||||||||||| |||||||||||||||||||||    
T  10161705 tttctgaatacactacaggacaaaacaaaaaacg 10161672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 11919010 - 11918901
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatca 228  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  11919010 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaaattaacatca 11918911  T
Q  229 aatgtacatt 238  Q
    ||||||||||    
T  11918910 aatgtacatt 11918901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 32328327 - 32328421
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  32328327 aaaaaggaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattagatgcaaacattaacatcaaat 32328421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 168 - 306
Target Start/End: Complemental strand, 13904458 - 13904308
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt------------agagagaatgacaatat 255  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||            | | ||||||||||| |    
T  13904458 tggtgtgtgaaactggttttaaaaagggtatatatattattagatgcgaaaattaacatcaaatgtacattggcttagtggcaacatagaatgacaatgt 13904359  T
Q  256 cccatacgcgcctgattcgactccctctagaagcaaaattaaaattttttc 306  Q
    |||||| ||||||| |||||||||| || | ||||||||| ||||||||||    
T  13904358 cccatatgcgcctggttcgactccccctgggagcaaaattgaaattttttc 13904308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 13906279 - 13906209
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||    
T  13906279 tggtgtgtgaaactggttttaaaaagggtatatatattattagatgcgaaaataaacatcaaatgtacatt 13906209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 11919444 - 11919513
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatcaaatgtaca 236  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11919444 tggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaaattaacatcaaatgtaca 11919513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 10162270 - 10162338
Alignment:
Q  137 aaaaatgaaaaa-ttggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatat 204  Q
    |||||||||||| ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  10162270 aaaaatgaaaaagttggatggttcatgcctcatggtgtgtgaatttggttttaaaaatggtatatatat 10162338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 13906781 - 13906831
Alignment:
Q  188 aaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13906781 aaaaatggtatatatattattggatgcaaaaatttacatcaaatgtacatt 13906831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 40808043 - 40808142
Alignment:
Q  145 aaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtata--------tatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    |||| |||||||||||  ||||||||||| ||||  |||||||||||||||||||        ||||||||||||||||||| |||||||||||||||||    
T  40808043 aaaaatggatggttcacgcctcatggtgtatgaatttggttttaaaaatggtatatatatatatatattattggatgcaaaatttaacatcaaatgtaca 40808142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 13906681 - 13906774
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcatatagaccctata--nnnnnnnnnataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||| ||||||||||||||||||||| |||||||||   |||||||||           |||||||||||||||||||||||||||||    
T  13906681 cacatattgtgcattatcccttaccaaatgagctaagctcatggggaccctatatttttttttttataagacttatattaaaaaaacaaaaatg 13906774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 10161627 - 10161551
Alignment:
Q  270 attcgactccctctagaagcaaaattaaaatttttt-ctca---ttctgaatacattacaggacaaaacaaaaaacg 342  Q
    |||||||||||||| | ||||||||| ||||||||| ||||   ||||||||||| |||| ||||||||||||||||    
T  10161627 attcgactccctctgggagcaaaattgaaatttttttctcaattttctgaatacactacatgacaaaacaaaaaacg 10161551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 1032610 - 1032569
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  1032610 cacatattgtgcattatcccttaccaaatgagctaagctcat 1032569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 4259899 - 4259858
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  4259899 cacatattgtgcattatcccttaccaaatgagttaagctcat 4259858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 41454882 - 41454923
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  41454882 cacatattgtgcattatcccttaccaaatgagctaagctcat 41454923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 41845484 - 41845525
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  41845484 cacatattgtgcattatcccttaccaaatgagctaagctcat 41845525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 61
Target Start/End: Original strand, 280051 - 280082
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgag 61  Q
    ||||||||||||||||||||||||||||||||    
T  280051 cacatattgtacattatcccttaccaaatgag 280082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 635801 - 635770
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgag 61  Q
    ||||||||||||||||||||||||||||||||    
T  635801 cacatattgtacattatcccttaccaaatgag 635770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 821604 - 821573
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgag 61  Q
    ||||||||||||||||||||||||||||||||    
T  821604 cacatattgtacattatcccttaccaaatgag 821573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 38544979 - 38545018
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctc 69  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  38544979 cacatattgtgcattatcccttaccaaatgaggtaagctc 38545018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 38289290 - 38289328
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagct 68  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  38289290 cacatattgtgcattatcccttaccaaatgagctaagct 38289328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 30466719 - 30466678
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||| ||||||||||||||| |||||||||    
T  30466719 cacatattgtgcattagcccttaccaaatgagctaagctcat 30466678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 36103977 - 36104018
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| |||||||| |||||||||||| |||||||||    
T  36103977 cacatattgtgcattatcctttaccaaatgagttaagctcat 36104018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 44828488 - 44828529
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  44828488 cacaaattgtgcattatcccttaccaaatgagctaagctcat 44828529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 3311475 - 3311439
Alignment:
Q  35 attgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  3311475 attgtacattatcccttgccaaatgagttaagctcat 3311439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 11052650 - 11052682
Alignment:
Q  41 cattatcccttaccaaatgagataagctcatat 73  Q
    ||||||||||||||||||||| |||||||||||    
T  11052650 cattatcccttaccaaatgagttaagctcatat 11052682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 39104647 - 39104607
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctca 70  Q
    |||||||||| ||||||||||||||||||||| ||| ||||    
T  39104647 cacatattgtgcattatcccttaccaaatgagctaaactca 39104607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 43456710 - 43456746
Alignment:
Q  33 atattgtacattatcccttaccaaatgagataagctc 69  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  43456710 atattgtgcattatcccttaccaaatgagctaagctc 43456746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 4632160 - 4632268
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  4632160 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaattaacatcaa 4632259  T
Q  230 atgtacatt 238  Q
    |||||||||    
T  4632260 atgtacatt 4632268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 32342816 - 32342925
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatca 228  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  32342816 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaaattaacatca 32342915  T
Q  229 aatgtacatt 238  Q
    ||||||||||    
T  32342916 aatgtacatt 32342925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 3402363 - 3402269
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3402363 aaaaatgaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaacattaacatcaaat 3402269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 27299361 - 27299442
Alignment:
Q  157 ttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||| |||||||||||||||||||||||||||||| | ||||||||||||| ||| | |||||||||||||||||||||||    
T  27299361 ttcatgcctcatggtgtgtgaaactggttttaaaaaggatatatatattattagattcgaaaattaacatcaaatgtacatt 27299442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 32342364 - 32342293
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32342364 tggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaaattaacatcaaatgtacatt 32342293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 3402966 - 3403066
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatg------gtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaa 230  Q
    ||||| ||||||||||||||||||| |||||||      ||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  3402966 aaaaaggaaaaattggatggttcatgcctcatggacatggtgtgtgaatctgattttaaaaatggtgtatatattattggatgcaaacattaacatcaaa 3403065  T
Q  231 t 231  Q
    |    
T  3403066 t 3403066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 4631781 - 4631713
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||||| |||||||||  |||| ||||| |||||||||||||||||||||||    
T  4631781 tggtgtgtgaaactggttttaaaaagggtatatat--tattagatgcgaaaattaacatcaaatgtacatt 4631713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 30777778 - 30777721
Alignment:
Q  165 tcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaatta 222  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30777778 tcatggttggtgaaactggttttagaaatggtatatatattattggatgcaaaaatta 30777721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 34107535 - 34107493
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcata 72  Q
    |||||||||| ||||||||||||||||||||| ||||||||||    
T  34107535 cacatattgtgcattatcccttaccaaatgagctaagctcata 34107493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 16403565 - 16403524
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  16403565 cacatattgtgcattatcccttaccaaatgagctaagctcat 16403524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 40203334 - 40203375
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  40203334 cacatattgtacattatcccttaccgaatgagctaagctcat 40203375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 6866548 - 6866510
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagct 68  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  6866548 cacatattgtgcattatcccttaccaaatgagttaagct 6866510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 381
Target Start/End: Original strand, 44249718 - 44249748
Alignment:
Q  351 aattgggtatatctgtcaatcagtttttgtc 381  Q
    |||||||||||||||||||||||||||||||    
T  44249718 aattgggtatatctgtcaatcagtttttgtc 44249748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 11069400 - 11069441
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| |||||| |||||||||||||| |||||||||    
T  11069400 cacatattgtgcattattccttaccaaatgagctaagctcat 11069441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 19843418 - 19843459
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||||||| ||||||||| ||||||| |||||||||    
T  19843418 cacatattgtacatcatcccttacgaaatgagttaagctcat 19843459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 25553200 - 25553241
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||  |||||||||    
T  25553200 cacatattgtgcattatcccttaccaaatgaattaagctcat 25553241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 31149156 - 31149197
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| || ||||||    
T  31149156 cacatattgtgcattatcccttaccaaatgagctatgctcat 31149197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 4632118 - 4632146
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  4632118 ataagacttatattaaaaaaacaaaaatg 4632146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 30777821 - 30777793
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  30777821 ataagacttatattaaaaaaacaaaaatg 30777793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 32342771 - 32342799
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  32342771 ataagacttatattaaaaaaacaaaaatg 32342799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 20378874 - 20378968
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20378874 aaaaatgaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 20378968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 45630418 - 45630317
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  45630418 agggaataaaaatgaaaaattggatggttcatgcttcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcaaaaattaacatcaa 45630319  T
Q  230 at 231  Q
    ||    
T  45630318 at 45630317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 47281225 - 47281319
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47281225 aaaaatgaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaacattaacatcaaat 47281319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 35012345 - 35012244
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  35012345 aaaaatgaaaaactggatggttcatgcctcatggtgtgcgaaactggttttaaaaagggtatatatattattagatgcaaaaattaacatcaaatgtaca 35012246  T
Q  237 tt 238  Q
    ||    
T  35012245 tt 35012244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 45282251 - 45282348
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgta 234  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  45282251 aaaaatgaaaaactggatggttcatgcctcatggtgtgtgaaactggttttaaaaagggtatatatattattagatgcaaaaattaacatcaaatgta 45282348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 45630832 - 45630933
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    |||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45630832 aaaaatgaaaaactgaatggttcatgcctcatggtgtgtgaaacttgttttaaaaatggtatatatattattagatgcaaaaattaacatcaaatgtaca 45630931  T
Q  237 tt 238  Q
    ||    
T  45630932 tt 45630933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 39719879 - 39719986
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  39719879 agggaacaaaaatgaaaaattggatggttcatgcctcatg-tgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaattaacatcaa 39719977  T
Q  230 atgtacatt 238  Q
    |||||||||    
T  39719978 atgtacatt 39719986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 45281873 - 45281769
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||| ||    
T  45281873 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatgttatatatattattggatgcgaaaattaacattaa 45281774  T
Q  230 atgta 234  Q
    |||||    
T  45281773 atgta 45281769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 9800028 - 9800132
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||| ||| | ||||||||||||||    
T  9800028 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtatgaaactgatttaaaaaatggtatatatattatttgatacgaaaattaacatcaa 9800127  T
Q  230 atgta 234  Q
    |||||    
T  9800128 atgta 9800132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 55537104 - 55537034
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  55537104 tggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaattaacatcaaatgtacatt 55537034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 39719519 - 39719449
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    |||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  39719519 tggtgtgtgaaactagttttaaaaagggtatatatattattagatgcgaaaattaacatcaaatgtacatt 39719449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 13209962 - 13209900
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaa 230  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||    
T  13209962 tggtgtgtgaaactggttttaaaaagggtatatatattattagatgcgaaaattaacatcaaa 13209900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 20320875 - 20320944
Alignment:
Q  167 atggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| | ||| |||| ||| ||||||    
T  20320875 atggtgtgtgaaactggttttagaaatggtatatatattagtggatgcgataatgaacaacaattgtaca 20320944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 20321011 - 20321083
Alignment:
Q  271 ttcgactccctctagaagcaaaattaaaattttttctca---ttctgaatacattacaggacaaaacaaaaaa 340  Q
    ||||| ||||||||| ||||||||| |||||||||||||   ||||||||||| || ||||||||||||||||    
T  20321011 ttcgagtccctctaggagcaaaattgaaattttttctcaattttctgaatacactagaggacaaaacaaaaaa 20321083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 9799946 - 9799902
Alignment:
Q  194 ggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  9799946 ggtatatatattattagatgcgaaaattaacatcaaatgtacatt 9799902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 8716594 - 8716556
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagct 68  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  8716594 cacatattgtgcattatcccttaccaaatgagataagct 8716556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 13210320 - 13210370
Alignment:
Q  188 aaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||| ||||| ||||||||||||||| |||||||||||||| ||||||||    
T  13210320 aaaaaaggtatgtatattattggatgcgaaaattaacatcaattgtacatt 13210370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 20320604 - 20320646
Alignment:
Q  170 gtgtgtgaaactggttttaaaaatggtatatatattattggat 212  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  20320604 gtgtgtgaaactggttttagaaatggtatatatattagtggat 20320646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 13210219 - 13210313
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcatatagaccctatannnnnnnnn---ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||| |||||||||| |||||||||| ||||||||||  |||||||||            |||||||||||||||||||||||||||||    
T  13210219 cacatattgtgcattatccctgaccaaatgagctaagctcatagggaccctatatttattatttttataagacttatattaaaaaaacaaaaatg 13210313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 16556491 - 16556450
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  16556491 cacatattgtgcattatcccttaccaaatgagctaagctcat 16556450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 40407016 - 40407057
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  40407016 cacatattgtgcattatcccttaccaaatgagctaagctcat 40407057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 46283162 - 46283121
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  46283162 cacatattgtgcattatcccttaccaaatgaggtaagctcat 46283121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 51974787 - 51974746
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  51974787 cacatattgtgcattatcccttaccaaatgagctaagctcat 51974746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 19687649 - 19687690
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||||||||||||||||||| |||||||| ||| |||||    
T  19687649 cacatattgtacattatcccttatcaaatgagttaatctcat 19687690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 36993081 - 36993040
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| |||||||||||| |||||||| |||||||||    
T  36993081 cacatattgtgcattatcccttatcaaatgagctaagctcat 36993040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 52366247 - 52366206
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| ||| |||||    
T  52366247 cacatattgtgcattatcccttaccaaatgagttaaactcat 52366206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 45281916 - 45281888
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  45281916 ataagacttatattaaaaaaacaaaaatg 45281888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 45630461 - 45630433
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  45630461 ataagacttatattaaaaaaacaaaaatg 45630433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 25964829 - 25964728
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  25964829 aaaaatgaaaaactggatggttcatgcctcatggtgtgtgaaactggttttaaaaagggtatatatattattagatgcaaaaattaacatcaaatgtaca 25964730  T
Q  237 tt 238  Q
    ||    
T  25964729 tt 25964728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 25965243 - 25965347
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaa 229  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  25965243 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaattaacatcaa 25965342  T
Q  230 atgta 234  Q
    |||||    
T  25965343 atgta 25965347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 36388940 - 36389041
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||    
T  36388940 aaaaatgaaaaactggatggttcatgcctcatggtgtgtgaaactggttttaaaaagggtatatatattattagatgcaaaaattaacattaaatgtaca 36389039  T
Q  237 tt 238  Q
    ||    
T  36389040 tt 36389041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 34238994 - 34239078
Alignment:
Q  150 tggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgta 234  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  34238994 tggatggttcatgcctcatggtgtgtgaaactggttttaaaaagggtatatatattattagatgcaaaaattaacatcaaatgta 34239078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 34238144 - 34238074
Alignment:
Q  164 ctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgta 234  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34238144 ctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcaaaaattaacatcaaatgta 34238074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 23824646 - 23824687
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  23824646 cacatattgtgcattatcccttaccaaatgagctaagctcat 23824687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 28712408 - 28712367
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  28712408 cacatattatacattatcccttaccaaatgagttaagctcat 28712367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 40273861 - 40273820
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  40273861 cacatattgtgcattatcccttaccaaatgagctaagctcat 40273820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 42554674 - 42554633
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  42554674 cacatattgtgcattatcccttaccaaatgagctaagctcat 42554633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 48433765 - 48433806
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  48433765 cacatattgtgcattatcccttaccaaatgagctaagctcat 48433806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 36528275 - 36528315
Alignment:
Q  31 acatattgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  36528275 acatattgtgcattatcccttaccaaatgagttaagctcat 36528315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 26456060 - 26456101
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| |||| |||||||||||||||| |||||||||    
T  26456060 cacatattgtgcattgtcccttaccaaatgagctaagctcat 26456101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 27454051 - 27454010
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  27454051 cacaaattgtgcattatcccttaccaaatgagctaagctcat 27454010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 31793508 - 31793467
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| |||||||||||| |||||||| |||||||||    
T  31793508 cacatattgtgcattatcccttaacaaatgagctaagctcat 31793467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 42338302 - 42338343
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| |||||| |||||||||||||| |||||||||    
T  42338302 cacatattgtgcattattccttaccaaatgagctaagctcat 42338343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 46266708 - 46266667
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  46266708 cacaaattgtgcattatcccttaccaaatgagttaagctcat 46266667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 48619837 - 48619796
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||||||||||||||| |||||||||||| ||| |||||    
T  48619837 cacatattgtacattatcctttaccaaatgagttaaactcat 48619796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 1575733 - 1575693
Alignment:
Q  31 acatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||  |||||||||||||||||||| |||||||||    
T  1575733 acatattgtgtattatcccttaccaaatgagttaagctcat 1575693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 22156138 - 22156110
Alignment:
Q  30 cacatattgtacattatcccttaccaaat 58  Q
    |||||||||||||||||||||||||||||    
T  22156138 cacatattgtacattatcccttaccaaat 22156110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 22212053 - 22212025
Alignment:
Q  30 cacatattgtacattatcccttaccaaat 58  Q
    |||||||||||||||||||||||||||||    
T  22212053 cacatattgtacattatcccttaccaaat 22212025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 34238779 - 34238751
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  34238779 ataagacttatattaaaaaaacaaaaatg 34238751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 36388563 - 36388535
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  36388563 ataagacttatattaaaaaaacaaaaatg 36388535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 44986629 - 44986593
Alignment:
Q  35 attgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  44986629 attgtgcattatcccttaccaaatgagctaagctcat 44986593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 17998 - 17904
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17998 aaaaatgaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaacattaacatcaaat 17904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 18613 - 18707
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    ||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18613 aaaaaggaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaacattaacatcaaat 18707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 30260596 - 30260487
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatca 228  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| |||    
T  30260596 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatattattggatgcgaaaaattaacttca 30260497  T
Q  229 aatgtacatt 238  Q
    ||||||||||    
T  30260496 aatgtacatt 30260487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 20821837 - 20821948
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatgg--tatatatattattggatgc-aaaaattaacat 226  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||  ||||||||||||||||||| ||||||||||||    
T  20821837 agggaacaaaaatgaaaaattggatggttcatgcctcatggtgtgtgaaactgatttaaaaaatggtatatatatattattggatgcgaaaaattaacat 20821936  T
Q  227 caaatgtacatt 238  Q
    ||||||||||||    
T  20821937 caaatgtacatt 20821948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 173843 - 173744
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    |||||||||||| |||||| ||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  173843 aaaaatgaaaaactggatgattcatgcttcatggtgtgtgaaactggttttaaaaagggtatatatattattagatgcaaaaattaacatcaaatgtaca 173744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 15716668 - 15716598
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||    
T  15716668 tggtgtgtgaaactggttttaaaaagggtatatatattattagatgcgaaaataaacatcaaatgtacatt 15716598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 309
Target Start/End: Complemental strand, 13000681 - 13000530
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacattag----------agagaatgacaatatcc 257  Q
    |||||||||||||||||||||||||  |||||||||||||| |||||  || ||||||||||||||||||| |          | | ||||||||| |||    
T  13000681 tggtgtgtgaaactggttttaaaaagagtatatatattattagatgcgcaatttaacatcaaatgtacattggcttagtgacaacacaatgacaatgtcc 13000582  T
Q  258 catacgcgcctgattcgactccctctagaagcaaaattaaaattttttctca 309  Q
    |||| ||||||| |||||||||| || | ||||||||| |||||||||||||    
T  13000581 catatgcgcctggttcgactccccctgggagcaaaattgaaattttttctca 13000530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 15717170 - 15717220
Alignment:
Q  188 aaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15717170 aaaaatggtatatatattattggatgcgaaaattaacatcaaatgtacatt 15717220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 5948798 - 5948729
Alignment:
Q  130 agggaataaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatat 204  Q
    |||||| ||||||||||||||||||||||||| ||||     ||||||| |||||||||||||| ||||||||||    
T  5948798 agggaagaaaaatgaaaaattggatggttcatgcctc-----gtgtgaatctggttttaaaaattgtatatatat 5948729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 20821397 - 20821333
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatggtatatatattattggatgc-aaaaattaacatcaaatgta 234  Q
    ||||||||||||||| ||| ||||||||||||||   |||||||||| ||||||||||||||||||||    
T  20821397 tggtgtgtgaaactgatttaaaaaatggtatata---tattggatgcgaaaaattaacatcaaatgta 20821333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 30422163 - 30422204
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  30422163 cacatattgtacattatcccttaccaaatgagttaagctcat 30422204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 5948703 - 5948663
Alignment:
Q  196 tatatatattattggatgcaaaaattaacatcaaatgtaca 236  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  5948703 tatatatattattggatgcgaaaattaacatcaaatgtaca 5948663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 5949139 - 5949175
Alignment:
Q  202 tattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    |||||||||||||||||||||||||||||||||||||    
T  5949139 tattattggatgcaaaaattaacatcaaatgtacatt 5949175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 24794950 - 24794992
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcata 72  Q
    |||||||||| ||||||||||||||||||||| ||||||||||    
T  24794950 cacatattgtgcattatcccttaccaaatgagctaagctcata 24794992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 6228315 - 6228356
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  6228315 cacatattgtgcattatcccttaccaaatgagctaagctcat 6228356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 15717068 - 15717109
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  15717068 cacatattgtgcattatcccttaccaaatgagctaagctcat 15717109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 21874276 - 21874314
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagct 68  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  21874276 cacatattgtgcattatcccttaccaaatgagttaagct 21874314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 4854361 - 4854402
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||| ||||||||||||||||| ||||||||| |||||||||    
T  4854361 cacacattgtacattatcccttgccaaatgagctaagctcat 4854402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 17216998 - 17216957
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||| | ||||||||||||||||||||| |||||||||    
T  17216998 cacatattatgcattatcccttaccaaatgagctaagctcat 17216957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 19748139 - 19748102
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagc 67  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  19748139 cacatattgtgcattatcccttaccaaatgagctaagc 19748102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 20821966 - 20822031
Alignment:
Q  244 gaatgacaatatcccatacgcgcctgattcgactccctctagaagcaaaattaaaattttttctca 309  Q
    ||||||||||  |||||| ||||||||||||| |||| || |  |||||||| |||||||||||||    
T  20821966 gaatgacaatgacccatatgcgcctgattcgattccccctgggtgcaaaattgaaattttttctca 20822031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 25045780 - 25045739
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    ||||||||||  |||||||||||||||||||| |||||||||    
T  25045780 cacatattgtgaattatcccttaccaaatgagctaagctcat 25045739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 30260961 - 30261021
Alignment:
Q  168 tggtgtgtgaaactggttttaaaaatgg--tatatatattattggatgc-aaaaattaaca 225  Q
    ||||||||||||||| ||| |||||| |  ||||||||||||||||||| |||||||||||    
T  30260961 tggtgtgtgaaactgatttaaaaaatagtatatatatattattggatgcgaaaaattaaca 30261021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 7927127 - 7927171
Alignment:
Q  33 atattgtacattatcccttaccaaatgagataagctcatatagac 77  Q
    ||||| |||||||||||||||||| |||| ||||||||| |||||    
T  7927127 atattatacattatcccttaccaagtgagttaagctcatgtagac 7927171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 20821795 - 20821823
Alignment:
Q  93 ataagacttatattaaaaaaacaaaaatg 121  Q
    |||||||||||||||||||||||||||||    
T  20821795 ataagacttatattaaaaaaacaaaaatg 20821823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 13008 - 13102
Alignment:
Q  137 aaaaatgaaaaattggatggttcattcctcatggtgtgtgaaactggttttaaaaatggtatatatattattggatgcaaaaattaacatcaaat 231  Q
    ||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||||    
T  13008 aaaaaggaaaaattggatggttcatgcctcatggtgtgtgaatctggttttaaaaatggtatatatattattggatgcaaacattagcaacaaat 13102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 121955 - 122005
Alignment:
Q  188 aaaaatggtatatatattattggatgcaaaaattaacatcaaatgtacatt 238  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  121955 aaaaatggtatatatattattggatgcgaaaattaacatcaaatgtacatt 122005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 121854 - 121895
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||| ||||||||||| |||||||||    
T  121854 cacatattgtgcattatcccctaccaaatgagctaagctcat 121895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 419752 - 419711
Alignment:
Q  30 cacatattgtacattatcccttaccaaatgagataagctcat 71  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  419752 cacatattgttcattatcccttaccaaatgagctaagctcat 419711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University