View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17775_low_16 (Length: 391)

Name: NF17775_low_16
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17775_low_16
NF17775_low_16
[»] chr3 (17 HSPs)
chr3 (216-380)||(4129672-4129836)
chr3 (130-380)||(4115158-4115408)
chr3 (207-380)||(4092491-4092664)
chr3 (130-380)||(4080288-4080538)
chr3 (150-380)||(4060700-4060930)
chr3 (33-126)||(4130173-4130266)
chr3 (33-126)||(4092070-4092163)
chr3 (35-130)||(4114813-4114908)
chr3 (33-130)||(4060333-4060430)
chr3 (33-130)||(4079942-4080039)
chr3 (310-380)||(3885137-3885207)
chr3 (54-108)||(911457-911511)
chr3 (62-130)||(3885634-3885702)
chr3 (310-381)||(3913779-3913850)
chr3 (50-130)||(5966045-5966125)
chr3 (63-126)||(2919752-2919815)
chr3 (256-380)||(5965551-5965675)
[»] chr1 (4 HSPs)
chr1 (205-380)||(13933096-13933271)
chr1 (33-130)||(13933596-13933693)
chr1 (310-380)||(14005489-14005559)
chr1 (50-99)||(17312002-17312051)
[»] scaffold0267 (2 HSPs)
scaffold0267 (216-380)||(18366-18530)
scaffold0267 (47-124)||(18923-19000)
[»] chr4 (1 HSPs)
chr4 (313-371)||(5988198-5988256)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 216 - 380
Target Start/End: Complemental strand, 4129836 - 4129672
Alignment:
Q  216 agattcaagaagggttttagtgacagtgaaaacatcaagatcttttgagacatgtgcccaccctttcacctcaaatttctgcttcatattggggtcattg 315  Q
    ||||||||||||||||||||||| |||  ||||||||| ||||||||||||||||||||| ||| || ||||||||||| |||||| |||||  ||||||    
T  4129836 agattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacattggaatcattg 4129737  T
Q  316 taaaggattttagctagtgttgttttccctagccctcccatacccgcaatggaaatcactcctat 380  Q
    |||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||    
T  4129736 taaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 4129672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 130 - 380
Target Start/End: Original strand, 4115158 - 4115408
Alignment:
Q  130 agcaagaactttttgttgcttaaagtttgttgcagttgtacttgcagactattcaagtcatttgtcttagttggttttgaagtgatagattcaagaaggg 229  Q
    ||||| |||||| | |||||||||  |||||||| ||  ||||| ||| |||||| |||||  || | | ||  |||||||||||  |||||||||| ||    
T  4115158 agcaaaaactttgtattgcttaaacattgttgcaatttcacttgtagaatattcaggtcatcagtgtcatttctttttgaagtgacggattcaagaatgg 4115257  T
Q  230 ttttagtgacagtgaaaacatcaagatcttttgagacatgtgcccaccctttcacctcaaatttctgcttcatattggggtcattgtaaaggattttagc 329  Q
    ||||||||||  ||| |||||||| ||| ||||||| ||||||||||||| | ||||||||||||||||||| ||   ||||||||||||||||||||||    
T  4115258 ttttagtgacgatgacaacatcaaaatcctttgagatatgtgcccaccctcttacctcaaatttctgcttcacatcatggtcattgtaaaggattttagc 4115357  T
Q  330 tagtgttgttttccctagccctcccatacccgcaatggaaatcactcctat 380  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  4115358 tagtgttgtttttcctagccctcccatccccacaatggaaatcactcctat 4115408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 207 - 380
Target Start/End: Original strand, 4092491 - 4092664
Alignment:
Q  207 tgaagtgatagattcaagaagggttttagtgacagtgaaaacatcaagatcttttgagacatgtgcccaccctttcacctcaaatttctgcttcatattg 306  Q
    |||||| | |||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||| ||      
T  4092491 tgaagttacagattcaagaagagttttagtgacagtgacaacattaagatctttggagacatgtgcccaccctcttacctcaaatttctgcttcacatca 4092590  T
Q  307 gggtcattgtaaaggattttagctagtgttgttttccctagccctcccatacccgcaatggaaatcactcctat 380  Q
     ||||||||||||||| ||||||||| |||||||| |||||||||||||| ||| |||||||||||||||||||    
T  4092591 tggtcattgtaaaggagtttagctagcgttgtttttcctagccctcccatccccacaatggaaatcactcctat 4092664  T

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Target: chr3; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 130 - 380
Target Start/End: Original strand, 4080288 - 4080538
Alignment:
Q  130 agcaagaactttttgttgcttaaagtttgttgcagttgtacttgcagactattcaagtcatttgtcttagttggttttgaagtgatagattcaagaaggg 229  Q
    ||||| ||||||||  | |||||| ||||||||| ||| ||||| ||| |||||||| |||  || | | ||   |||||||||| ||||||||| | ||    
T  4080288 agcaaaaactttttacttcttaaactttgttgcaattgcacttgtagaatattcaaggcatcagtgtcatttctctttgaagtgacagattcaaggatgg 4080387  T
Q  230 ttttagtgacagtgaaaacatcaagatcttttgagacatgtgcccaccctttcacctcaaatttctgcttcatattggggtcattgtaaaggattttagc 329  Q
    |||||||||| |||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||  |   |||| ||||| |||| ||||||    
T  4080388 ttttagtgacggtgacaacatcaaaatcttttgagatatgtgcccaccctctcacctcaaatttctccttcacttcacggtcgttgtagaggagtttagc 4080487  T
Q  330 tagtgttgttttccctagccctcccatacccgcaatggaaatcactcctat 380  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  4080488 tagtgttgtttttcctagccctcccatccccacaatggaaatcactcctat 4080538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 150 - 380
Target Start/End: Original strand, 4060700 - 4060930
Alignment:
Q  150 taaagtttgttgcagttgtacttgcagactattcaagtcatttgtcttagttggttttgaagtgatagattcaagaagggttttagtgacagtgaaaaca 249  Q
    |||| ||||||||| ||| || || ||| ||||||||||||  || | | ||  ||||||||||| ||||| ||||| |||||||||||| |||| ||||    
T  4060700 taaactttgttgcaattgcacctgtagaatattcaagtcatcagtgtcatttctttttgaagtgacagattgaagaatggttttagtgacggtgacaaca 4060799  T
Q  250 tcaagatcttttgagacatgtgcccaccctttcacctcaaatttctgcttcatattggggtcattgtaaaggattttagctagtgttgttttccctagcc 349  Q
    |||| ||||||||||| ||||||||||||| | |  |||||||||| |||||  |   ||||||||||||||| |||||| ||||||||||| |||||||    
T  4060800 tcaaaatcttttgagatatgtgcccaccctcttaaatcaaatttctccttcacttcatggtcattgtaaaggagtttagcaagtgttgtttttcctagcc 4060899  T
Q  350 ctcccatacccgcaatggaaatcactcctat 380  Q
    ||||||| ||| |||||||||||||||||||    
T  4060900 ctcccatccccacaatggaaatcactcctat 4060930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 4130266 - 4130173
Alignment:
Q  33 cattccaataaccttgtgacaatttggtgcgaagaagacctccaagtgctactgcagctaatggtaacccgtcacactttttggcaatttctct 126  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||    
T  4130266 cattccaataatcttgtgacaatttggtgcgaagaaaacctccaagtgctattgcagctaatggtaacccatcacattttttggcaatttctct 4130173  T

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Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 4092070 - 4092163
Alignment:
Q  33 cattccaataaccttgtgacaatttggtgcgaagaagacctccaagtgctactgcagctaatggtaacccgtcacactttttggcaatttctct 126  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||| |||||||||| ||| ||| |||||||||||||||||||||||    
T  4092070 cattccaataatcttgtgacaatttggtgcgaagaagacccctaagtgctattgcagctaatcgtatcccatcacactttttggcaatttctct 4092163  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 4114813 - 4114908
Alignment:
Q  35 ttccaataaccttgtgacaatttggtgcgaagaagacctccaagtgctactgcagctaatggtaacccgtcacactttttggcaatttctctgcca 130  Q
    ||||| ||| ||||||| ||||||||||||||||||||||| | ||| | ||||||||||||||| || ||||| |||||||||||||||||||||    
T  4114813 ttccagtaatcttgtgataatttggtgcgaagaagacctcctattgccattgcagctaatggtaaaccatcacattttttggcaatttctctgcca 4114908  T

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Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 4060333 - 4060430
Alignment:
Q  33 cattccaataaccttgtgacaatttggtgcgaagaagacctccaagtgctactgcagctaatggtaacccgtcacactttttggcaatttctctgcca 130  Q
    ||||||||||| ||||||| | ||||||||||||||||||||| | ||||| ||||||||||||||| || ||||| ||||| | |||||||||||||    
T  4060333 cattccaataatcttgtgatagtttggtgcgaagaagacctcctattgctattgcagctaatggtaaaccatcacatttttttgaaatttctctgcca 4060430  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 4079942 - 4080039
Alignment:
Q  33 cattccaataaccttgtgacaatttggtgcgaagaagacctccaagtgctactgcagctaatggtaacccgtcacactttttggcaatttctctgcca 130  Q
    ||||||||||| ||||||| | |||||||||||||||||| || | ||||| ||||||||||||||| || ||||| ||||| | |||||||||||||    
T  4079942 cattccaataatcttgtgatagtttggtgcgaagaagaccccctattgctattgcagctaatggtaaaccatcacatttttttgaaatttctctgcca 4080039  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 3885207 - 3885137
Alignment:
Q  310 tcattgtaaaggattttagctagtgttgttttccctagccctcccatacccgcaatggaaatcactcctat 380  Q
    |||||| |||||| |||||||||||||||||| || ||||||||||| ||  |||||||||||||||||||    
T  3885207 tcattgaaaaggagtttagctagtgttgtttttccaagccctcccatgcctacaatggaaatcactcctat 3885137  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 911457 - 911511
Alignment:
Q  54 atttggtgcgaagaagacctccaagtgctactgcagctaatggtaacccgtcaca 108  Q
    |||| |||||||||||||| |||||||||||||||||||||||||| || |||||    
T  911457 atttagtgcgaagaagacccccaagtgctactgcagctaatggtaatccatcaca 911511  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 3885702 - 3885634
Alignment:
Q  62 cgaagaagacctccaagtgctactgcagctaatggtaacccgtcacactttttggcaatttctctgcca 130  Q
    ||||||||||| || |||||||||||||||| |||||| || |||||||||||  |||||||| |||||    
T  3885702 cgaagaagaccgcctagtgctactgcagctattggtaagccatcacactttttcacaatttctttgcca 3885634  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 3913779 - 3913850
Alignment:
Q  310 tcattgtaaaggattttagctagtgttgttttccctagccctcccatacccgcaatggaaatcactcctatg 381  Q
    ||||||||||| | |||||||||||||||||| || | ||||||||||||  |||| || ||||||||||||    
T  3913779 tcattgtaaagtagtttagctagtgttgtttttccaatccctcccataccaacaatagatatcactcctatg 3913850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 5966125 - 5966045
Alignment:
Q  50 gacaatttggtgcgaagaagacctccaagtgctactgcagctaatggtaacccgtcacactttttggcaatttctctgcca 130  Q
    ||||||||||||||||||| | | ||||||||||||||||| |||||| | || | ||| || || |||| ||||||||||    
T  5966125 gacaatttggtgcgaagaatatccccaagtgctactgcagcaaatggtgatccataacatttatttgcaacttctctgcca 5966045  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 2919815 - 2919752
Alignment:
Q  63 gaagaagacctccaagtgctactgcagctaatggtaacccgtcacactttttggcaatttctct 126  Q
    |||||||| | |||| || || ||||||||||||||| |||||||| ||||| |||||||||||    
T  2919815 gaagaagagccccaactgatattgcagctaatggtaatccgtcacatttttttgcaatttctct 2919752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 5965675 - 5965551
Alignment:
Q  256 tcttttgagacatgtgcccaccctttcacctcaaatttctgcttcatattggggtcattgtaaaggattttagctagtgttgttttccctagccctccca 355  Q
    |||||||| ||||||| |||| |||| | ||||||||| | ||| | || ||| ||||||||||| |  ||||| || |||||||| || | |||| | |    
T  5965675 tcttttgaaacatgtgaccacacttttaactcaaatttatccttaacatcgggatcattgtaaagaaccttagcaagggttgttttaccaatcccttcaa 5965576  T
Q  356 tacccgcaatggaaatcactcctat 380  Q
    ||||| |||||||||| | ||||||    
T  5965575 tacccacaatggaaataattcctat 5965551  T

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Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 205 - 380
Target Start/End: Complemental strand, 13933271 - 13933096
Alignment:
Q  205 tttgaagtgatagattcaagaagggttttagtgacagtgaaaacatcaagatcttttgagacatgtgcccaccctttcacctcaaatttctgcttcatat 304  Q
    |||||||||| ||||||||| | |||||||||||| |||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||  |    
T  13933271 tttgaagtgacagattcaaggatggttttagtgacggtgacaacatcaaaatcttttgagatatgtgcccaccctctcacctcaaatttctccttcactt 13933172  T
Q  305 tggggtcattgtaaaggattttagctagtgttgttttccctagccctcccatacccgcaatggaaatcactcctat 380  Q
       |||| ||||| |||| |||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  13933171 cacggtcgttgtagaggagtttagctagtgttgtttttcctagccctcccatccccacaatggaaatcactcctat 13933096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 13933693 - 13933596
Alignment:
Q  33 cattccaataaccttgtgacaatttggtgcgaagaagacctccaagtgctactgcagctaatggtaacccgtcacactttttggcaatttctctgcca 130  Q
    ||||||||||| ||||||| |||||||||||||||||||| || | ||||| |||||||||||| || || ||||| |||||||||||||||||||||    
T  13933693 cattccaataatcttgtgagaatttggtgcgaagaagaccccctattgctattgcagctaatggcaagccatcacattttttggcaatttctctgcca 13933596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 14005489 - 14005559
Alignment:
Q  310 tcattgtaaaggattttagctagtgttgttttccctagccctcccatacccgcaatggaaatcactcctat 380  Q
    |||||| |||||| |||||||||||||||||| || ||||||||||| ||  |||||||||||||||||||    
T  14005489 tcattgaaaaggagtttagctagtgttgtttttccaagccctcccatgcctacaatggaaatcactcctat 14005559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 17312051 - 17312002
Alignment:
Q  50 gacaatttggtgcgaagaagacctccaagtgctactgcagctaatggtaa 99  Q
    ||||||||| ||| ||||| | || |||||||||||||||||||||||||    
T  17312051 gacaatttgatgcaaagaaaatctgcaagtgctactgcagctaatggtaa 17312002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 380
Target Start/End: Complemental strand, 18530 - 18366
Alignment:
Q  216 agattcaagaagggttttagtgacagtgaaaacatcaagatcttttgagacatgtgcccaccctttcacctcaaatttctgcttcatattggggtcattg 315  Q
    ||||||||||||||||||||||||   || || ||||| ||||||||||| || ||||||||||||||  |||||||||| ||| |  |  || || |||    
T  18530 agattcaagaagggttttagtgacccggacaatatcaaaatcttttgagatatatgcccaccctttcaaatcaaatttctcctttacttccggatcgttg 18431  T
Q  316 taaaggattttagctagtgttgttttccctagccctcccatacccgcaatggaaatcactcctat 380  Q
    ||||| | |||||| || |||||||| || |  |||||||| ||| |||||||||||||||||||    
T  18430 taaagaagtttagcaagagttgttttacccaagcctcccattcccacaatggaaatcactcctat 18366  T

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Target: scaffold0267; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 19000 - 18923
Alignment:
Q  47 tgtgacaatttggtgcgaagaagacctccaagtgctactgcagctaatggtaacccgtcacactttttggcaatttct 124  Q
    ||||||| ||||||||| |||||||| ||||||||||| |||||||| ||||| || ||||| |||||||||||||||    
T  19000 tgtgacagtttggtgcggagaagacccccaagtgctacagcagctaacggtaaaccatcacattttttggcaatttct 18923  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 5988256 - 5988198
Alignment:
Q  313 ttgtaaaggattttagctagtgttgttttccctagccctcccatacccgcaatggaaat 371  Q
    |||||||||| ||| ||||| |||||||| || | ||||||||||||| ||||||||||    
T  5988256 ttgtaaaggagtttggctagggttgttttaccaacccctcccatacccacaatggaaat 5988198  T

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