View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_low_18 (Length: 375)
Name: NF17775_low_18
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 34037202 - 34036854
Alignment:
| Q |
11 |
caaaggtgttaaattagtaaatgagattttagaaactttgcatatattttttcattgaacaaacaaacagtcaacctctaaagtaccacttttttacaaa |
110 |
Q |
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| T |
34037202 |
caaaggtgttaaattagtaaatgagattttagaaactttgcatatattttttcattgaacaaacaaacagtcaacctctaaaataccacttttttacaaa |
34037103 |
T |
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| Q |
111 |
ttcagtccatcgactactataataaactaaaaacgtccaaaaactattctttcatccaactattagcccatcaattggttaacactcgtattaagttgat |
210 |
Q |
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| T |
34037102 |
ttcagtccatcaactactataatcaactaaaaacgtccaaaaactattctttcatccaactattagcccatcaattggttaacactcgtattaagttgat |
34037003 |
T |
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| Q |
211 |
cattagtagttcttaaactccaaaaatacatcaattaagtctttaaaaagtcatgtgaaaaacaaccaattagtccctaaatgttannnnnnnngtgaaa |
310 |
Q |
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| T |
34037002 |
cattagtagttcttaaactccaaaaatacatcaattaagtctttaaaaagtcatgtgaaaaacaaccaattagtccctaaatgttattttttttgtgaaa |
34036903 |
T |
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| Q |
311 |
tatatattctctaatccacaactaaatacaaaggatattgttttagttt |
359 |
Q |
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| T |
34036902 |
tatatcttctctaatccacaactaaatacaaaggatattgttttagttt |
34036854 |
T |
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