View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_low_25 (Length: 289)
Name: NF17775_low_25
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 53 - 272
Target Start/End: Original strand, 41556508 - 41556727
Alignment:
| Q |
53 |
catcaagcatcgacaaaactacaactatgtgcatagccctaacttcagtgattatagtttcagaagtggcagcactagctcctttgaacctgatccaatt |
152 |
Q |
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| T |
41556508 |
catcaagcatcgacaaaactacaactatgtgcatagccctaacttcagtgattatagtttcagcagtggcagcactagctcctttgaacctgatccaatt |
41556607 |
T |
|
| Q |
153 |
atagactcatacaactataataacaacccttttctactcccaactactcttccatttcctcctaataactttgtttctcaatccaatccaaccctttttc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41556608 |
atagactcatacaactataataacaacccttttctactcccaactactcttccatttcctcctaataactttgtttctcaatccaatccaaccctttttc |
41556707 |
T |
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| Q |
253 |
cttctttcaacaatgctctt |
272 |
Q |
| |
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|||||||||||||||||||| |
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| T |
41556708 |
cttctttcaacaatgctctt |
41556727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 65 - 272
Target Start/End: Original strand, 41589165 - 41589372
Alignment:
| Q |
65 |
acaaaactacaactatgtgcatagccctaacttcagtgattatagtttcagaagtggcagcactagctcctttgaacctgatccaattatagactcatac |
164 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41589165 |
acaaaactacaactttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatac |
41589264 |
T |
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| Q |
165 |
aactataataacaacccttttctactcccaactactcttccatttcctcctaataactttgtttctcaatccaatccaaccctttttccttctttcaaca |
264 |
Q |
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| T |
41589265 |
aactacaattacaacccttttctactcccaaatactcctccattttctcctaataactttgtttctcaatctaattcaaccattttcccttctttcaata |
41589364 |
T |
|
| Q |
265 |
atgctctt |
272 |
Q |
| |
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|||||||| |
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| T |
41589365 |
atgctctt |
41589372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 41570240 - 41570404
Alignment:
| Q |
67 |
aaaactacaactatgtgcatagccctaacttcagtgattatagtttcagaagtggcagcactagctcctttgaacctgatccaattatagactcatacaa |
166 |
Q |
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|||||||||| | ||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||| ||||||| |
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| T |
41570240 |
aaaactacaaatttgtgcatagccctgacatcagtgattatagtttcagcagtggtagcactagctcctttgaacttgaaccaattatagagacatacaa |
41570339 |
T |
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| Q |
167 |
ctataataacaacccttttctactcccaactactcttccatttcctcctaataactttgtttctcaat |
234 |
Q |
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||| ||| ||||| | |||| |||||||| |||||||||| ||||||| |||||||||||||||| |
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| T |
41570340 |
ctacaattacaacacctttccactcccaaatactcttccaattcctcc---aaactttgtttctcaat |
41570404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 154 - 272
Target Start/End: Original strand, 41582725 - 41582843
Alignment:
| Q |
154 |
tagactcatacaactataataacaacccttttctactcccaactactcttccatttcctcctaataactttgtttctcaatccaatccaaccctttttcc |
253 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||| || |
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| T |
41582725 |
tagactcatacaactacaattacaacccttttctactcccaaatactcctccattttctcctaataactttgtttctcaatctaattcaacccttttccc |
41582824 |
T |
|
| Q |
254 |
ttctttcaacaatgctctt |
272 |
Q |
| |
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||| ||||| ||||||||| |
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| T |
41582825 |
ttccttcaataatgctctt |
41582843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 41579177 - 41579251
Alignment:
| Q |
80 |
tgtgcatagccctaacttcagtgattatagtttcagaagtggcagcactagctcctttgaacctgatccaattat |
154 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||| |||||||||||| |
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| T |
41579177 |
tgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattat |
41579251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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