View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_low_27 (Length: 285)
Name: NF17775_low_27
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 2015810 - 2015562
Alignment:
| Q |
17 |
tggtattttgagattttgactaatatcgttaacataaattgacttgaaacatcaacaagctaggaagagcagaaagaaaattatcatgtttccatttatg |
116 |
Q |
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| T |
2015810 |
tggtatttagagattttgactaatgtcgttaacataaattgacttgaaacatcaacaagctaggaagagcagaaagaaaattatcatgtttccatttatg |
2015711 |
T |
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| Q |
117 |
ttcaggtgtcagcatgagccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaacaattt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2015710 |
ttcaggtgtcagcatgagccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaacaattt |
2015611 |
T |
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| Q |
217 |
tttcaacaaaatggtggcttactactacaacaacaactagtgaggcacg |
265 |
Q |
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| T |
2015610 |
tttcaacaaaatggtggcttactactacaacaagaagtagtgaggcacg |
2015562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 40567961 - 40568160
Alignment:
| Q |
56 |
tgacttgaaacatcaacaagctaggaagagcagaaagaaaattatcatgtttcca----tttatgttcaggtgtcagcatgagccttgtagcactactgg |
151 |
Q |
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| T |
40567961 |
tgacttgaaacatcaacaagctacgaaaagcagaaaggaaatgaataagtttccatttgtttatgtccaggtgtcagcgtaagcctcatattactactgg |
40568060 |
T |
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| Q |
152 |
ttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaacaattttttcaacaaaatggtggcttactactacaacaaca |
251 |
Q |
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| T |
40568061 |
tgggtagcttttatgcgtattgggcattgaagaaaagaaagctcattcgacttaaagaacaattttttcaacaaaacggtggcttactgttacaacaaca |
40568160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 111 - 251
Target Start/End: Original strand, 40579078 - 40579218
Alignment:
| Q |
111 |
tttatgttcaggtgtcagcatgagccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaa |
210 |
Q |
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|||||||||||||||||| | ||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||| |
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| T |
40579078 |
tttatgttcaggtgtcagtgtaagcctcgtagcactgctgattggaagcttttatgcatatttggcattcaagaaaagaaagttcattaaacttaaagaa |
40579177 |
T |
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| Q |
211 |
caattttttcaacaaaatggtggcttactactacaacaaca |
251 |
Q |
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| T |
40579178 |
cattttttccaacaaaatggtggcatactgttacaacaaca |
40579218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 40572643 - 40572775
Alignment:
| Q |
133 |
agccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaacaattttttcaacaaaatggtg |
232 |
Q |
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||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||| |
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| T |
40572643 |
agcctcgtagcactgctgattggaagcttttatgcatatttggcattcaagaaaagaaagttcattaaacttcaagaacatttttttcaacaaaatggtg |
40572742 |
T |
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| Q |
233 |
gcttactactacaacaacaactagtgaggcacg |
265 |
Q |
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||||||| |||||||||| ||| |||||||| |
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| T |
40572743 |
gcttactgttacaacaacagatagggaggcacg |
40572775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 40590949 - 40591054
Alignment:
| Q |
134 |
gccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaacaattttttcaacaaaatggtgg |
233 |
Q |
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|||| ||||||||||||||||||||| |||||| ||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
40590949 |
gcctcgtagcactactggttggaagcaattatgcttatttggcattgaaacaaagaaagcttgataaacttaaagaacaattttttcaacaaaatggtgg |
40591048 |
T |
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| Q |
234 |
cttact |
239 |
Q |
| |
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|||||| |
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| T |
40591049 |
cttact |
40591054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 40601576 - 40601717
Alignment:
| Q |
111 |
tttatgttcaggtgtcagcatgagccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaa |
210 |
Q |
| |
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||||||| |||||||| || | |||| |||||||||||||| |||||| | ||||| ||||| ||||| |||||||||| || ||||||| |||||| |
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| T |
40601576 |
tttatgtacaggtgtctgcgtaggcctcgtagcactactggtaggaagcatgtatgcatatttagcattgaagaaaagaagtcttgttaaacttaaagaa |
40601675 |
T |
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| Q |
211 |
caattttttcaacaaaatggtggcttactactacaacaacaa |
252 |
Q |
| |
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| T |
40601676 |
catttttttcaacaaaacggtggtttactgttacaacaacaa |
40601717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 259
Target Start/End: Original strand, 40597408 - 40597556
Alignment:
| Q |
111 |
tttatgttcaggtgtcagcatgagccttgtagcactactggttggaagcttttatgcgtatttggcattaaagaaaagaaagctcattaaactgaaagaa |
210 |
Q |
| |
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||||||| ||||||| || | ||||| |||| ||||||||| |||||||||||||| |||| ||| || ||||||| |||| |||||||||| |||||| |
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| T |
40597408 |
tttatgtccaggtgttagtgtaagcctcgtaggactactggtgggaagcttttatgcttattgggctttgaagaaaataaagatcattaaacttaaagaa |
40597507 |
T |
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| Q |
211 |
caattttttcaacaaaatggtggcttactactacaacaacaactagtga |
259 |
Q |
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| T |
40597508 |
gagttttttaagcaaaacggtggcttactgttagaacaacaaatagtga |
40597556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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