View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17775_low_3 (Length: 565)

Name: NF17775_low_3
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17775_low_3
NF17775_low_3
[»] chr5 (13 HSPs)
chr5 (12-550)||(5894570-5895118)
chr5 (242-302)||(31084332-31084392)
chr5 (242-296)||(13287395-13287449)
chr5 (232-288)||(12159952-12160007)
chr5 (227-298)||(21351899-21351969)
chr5 (232-291)||(33178025-33178083)
chr5 (232-302)||(10298569-10298638)
chr5 (242-291)||(6247631-6247680)
chr5 (242-291)||(8420036-8420085)
chr5 (242-287)||(14674278-14674323)
chr5 (242-291)||(21191057-21191106)
chr5 (242-298)||(22423806-22423862)
chr5 (242-298)||(39698550-39698606)
[»] chr8 (15 HSPs)
chr8 (232-298)||(29447104-29447169)
chr8 (242-292)||(4298886-4298936)
chr8 (242-298)||(22651985-22652041)
chr8 (242-298)||(28745507-28745563)
chr8 (242-296)||(2572052-2572106)
chr8 (242-291)||(8342981-8343030)
chr8 (242-291)||(20873078-20873127)
chr8 (232-291)||(15816130-15816188)
chr8 (232-291)||(18170483-18170541)
chr8 (232-291)||(18634051-18634109)
chr8 (242-291)||(4948661-4948710)
chr8 (242-291)||(8343325-8343374)
chr8 (219-296)||(21465399-21465475)
chr8 (242-291)||(25566850-25566899)
chr8 (242-286)||(41831946-41831990)
[»] chr7 (14 HSPs)
chr7 (242-298)||(7438715-7438771)
chr7 (243-302)||(9778510-9778569)
chr7 (242-296)||(6028634-6028688)
chr7 (242-292)||(11061076-11061126)
chr7 (232-298)||(11665434-11665499)
chr7 (233-302)||(32094010-32094079)
chr7 (242-291)||(9408335-9408384)
chr7 (227-291)||(3991319-3991382)
chr7 (242-302)||(5409826-5409886)
chr7 (242-298)||(24339651-24339707)
chr7 (242-306)||(18215172-18215236)
chr7 (242-298)||(26033455-26033511)
chr7 (242-270)||(38143232-38143260)
chr7 (242-302)||(43027459-43027519)
[»] chr4 (8 HSPs)
chr4 (232-298)||(24613695-24613760)
chr4 (242-302)||(12895106-12895166)
chr4 (219-328)||(37203251-37203358)
chr4 (242-290)||(6485613-6485661)
chr4 (242-302)||(21720497-21720557)
chr4 (242-291)||(23292987-23293036)
chr4 (242-302)||(3947756-3947816)
chr4 (242-290)||(29205453-29205501)
[»] chr6 (9 HSPs)
chr6 (242-291)||(403865-403914)
chr6 (242-291)||(426515-426564)
chr6 (233-302)||(10770664-10770732)
chr6 (242-298)||(5970102-5970158)
chr6 (242-298)||(16766706-16766762)
chr6 (232-291)||(34595134-34595192)
chr6 (242-291)||(17841590-17841639)
chr6 (242-298)||(9107364-9107420)
chr6 (242-302)||(12696333-12696393)
[»] scaffold0011 (1 HSPs)
scaffold0011 (232-291)||(17750-17808)
[»] chr3 (10 HSPs)
chr3 (216-291)||(1509523-1509597)
chr3 (232-291)||(55401075-55401133)
chr3 (242-296)||(39756245-39756299)
chr3 (242-300)||(49651778-49651836)
chr3 (216-291)||(51206354-51206429)
chr3 (242-292)||(10268486-10268536)
chr3 (243-277)||(35222498-35222532)
chr3 (242-291)||(28918010-28918059)
chr3 (242-298)||(14832108-14832164)
chr3 (242-302)||(25948877-25948937)
[»] chr2 (7 HSPs)
chr2 (232-291)||(30335417-30335475)
chr2 (242-291)||(15657873-15657922)
chr2 (242-291)||(18255981-18256030)
chr2 (242-291)||(20539675-20539724)
chr2 (242-291)||(37558986-37559035)
chr2 (242-299)||(39026827-39026884)
chr2 (232-292)||(18841013-18841072)
[»] chr1 (13 HSPs)
chr1 (232-291)||(22881617-22881675)
chr1 (242-291)||(22515888-22515937)
chr1 (242-291)||(38078662-38078711)
chr1 (242-302)||(1486699-1486759)
chr1 (232-296)||(24577182-24577245)
chr1 (242-290)||(32461465-32461513)
chr1 (242-292)||(40258933-40258983)
chr1 (242-291)||(5927341-5927390)
chr1 (242-291)||(9103649-9103697)
chr1 (242-291)||(18337338-18337387)
chr1 (242-291)||(46348384-46348433)
chr1 (242-270)||(16164337-16164365)
chr1 (242-298)||(47989506-47989562)
[»] scaffold0027 (1 HSPs)
scaffold0027 (242-291)||(46691-46740)
[»] scaffold0450 (1 HSPs)
scaffold0450 (232-298)||(8629-8694)
[»] scaffold0223 (1 HSPs)
scaffold0223 (242-298)||(20181-20237)


Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 12 - 550
Target Start/End: Complemental strand, 5895118 - 5894570
Alignment:
Q  12 atgaaaatagacaggaagtgggtttataaaagcggttaaagatggagatgaaggtgaatatgggattcagttacctgcaagccacggtgaaacccaattt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5895118 atgaaaatagacaggaagtgggtttataaaagcggttaaagatggagatgaaggtgaatatgggattcagttacctgcaagccacggtgaaacccaattt 5895019  T
Q  112 agaggctataaaagcaaccctgccacaaatgactgggttcccaaccttaatcatcaacatatggtatagtggtatattaatagccctgccctattagtta 211  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5895018 agaggttataaaagcaaccctgccacaaatgactgggttcccaaccttaatcatcaacatatggtatagtggtatattaatagccctgccctattagtta 5894919  T
Q  212 ttatatacggacacg------acacagacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacaccgg 305  Q
    |||||||||||||||      |||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  5894918 ttatatacggacacggacacgacacggacacaactaa-taatttgaaaaaatcatataatttaatctaactacaagtgtcggtgtcgtgtcggacaccgg 5894820  T
Q  306 ggcacatataatccaagaagtgttagtgctttatattattgaatcaaatca-----tacatatgatgagttgtgatttgttagcaggactatgtgtcgtc 400  Q
    | ||| ||||||| ||| ||||| |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||    
T  5894819 gacacgtataatctaaggagtgtcagtgctttatattattgaatcaaatcaaatcatacatatgatgagttgtgatttgttagcaggactatgtgtcgtc 5894720  T
Q  401 taagcctaataggagcgagagcacctagatcttgctggataaaacggactctcttgaatcatgcttgtttgtatgtttgttcatttggtgtttgtaagag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5894719 taagcctaataggagcgagagcacctagatcttgctggataaaacggactctcttgaatcatgcttgtttgtatgtttgttcatttggtgtttgtaagag 5894620  T
Q  501 acggtcactgtgtttggtgggactacagtttttgttgtagcgacggaact 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5894619 acggtcactgtgtttggtgggactacagtttttgttgtagcgacggaact 5894570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 31084332 - 31084392
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    ||||||||||||||||||||||||| ||| ||| ||||| ||||| |||| ||||||||||    
T  31084332 aataatttgaaaaaatcacataattcaatgtaattacaagtgtcgatgtcgtgtcggacac 31084392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 13287449 - 13287395
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 296  Q
    ||||||||||||||||||||||||| | | ||||||||| |||||||||| ||||    
T  13287449 aataatttgaaaaaatcacataattcagtgtaactacaagtgtcggtgtcgtgtc 13287395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 12159952 - 12160007
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggt 288  Q
    ||||||||||| |||||| |||||| ||||||||||||| ||| |||||||||||||    
T  12159952 gacacaactaa-taatttaaaaaaaacacataatttaatgtaattacaaatgtcggt 12160007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 21351969 - 21351899
Alignment:
Q  227 acacagacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    |||| ||||||||||| ||||| |||||| |||||||||| | | ||| ||||| |||||||||||||||||    
T  21351969 acaccgacacaactaa-taattggaaaaagtcacataattcagtgtaattacaagtgtcggtgtcatgtcgg 21351899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 33178025 - 33178083
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||| |||||| |||||||||||||||||| | ||| ||||| ||||||||||    
T  33178025 gacacaactaa-taatttaaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 33178083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 10298569 - 10298638
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    ||||||||||| |||||||||||| |||||||||  ||| ||| ||||| |||||||||| | ||||||||    
T  10298569 gacacaactaa-taatttgaaaaagtcacataatacaatgtaattacaagtgtcggtgtcgtatcggacac 10298638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 6247631 - 6247680
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||| | | ||| ||||| ||||||||||    
T  6247631 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtc 6247680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 8420036 - 8420085
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    |||||||||||||||| |||||||| ||| ||| ||||| ||||||||||    
T  8420036 aataatttgaaaaaataacataattcaatgtaattacaagtgtcggtgtc 8420085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 14674278 - 14674323
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcgg 287  Q
    ||||||||||||||||||||||||||| | ||| ||||| ||||||    
T  14674278 aataatttgaaaaaatcacataatttagtgtaattacaagtgtcgg 14674323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 21191106 - 21191057
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||| | | ||| ||||| ||||||||||    
T  21191106 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtc 21191057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 22423862 - 22423806
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    |||||||||| |||||||||||||| ||| ||| || | ||||||||||| ||||||    
T  22423862 aataatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcgg 22423806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 39698550 - 39698606
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||||||||||||||||| | | ||| ||||| |||| ||||| ||||||    
T  39698550 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcgg 39698606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 29447169 - 29447104
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||| |||||||| |||||||||||||| ||| ||||||||| |||||||||||||||||    
T  29447169 gacacaactaa-taatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcgg 29447104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 4298936 - 4298886
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtca 292  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  4298936 aataatttgaaaaaatcacataatttaatgtaattacaagtgtcggtgtca 4298886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 22651985 - 22652041
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||||||||||||||||| ||| ||| ||||| |||||||||| ||||||    
T  22651985 aataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcgg 22652041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 28745507 - 28745563
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||| |||| ||||||    
T  28745507 aataatttgaaaaattcacataattcaatgtaactacaaatgtcgatgtcgtgtcgg 28745563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 2572106 - 2572052
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 296  Q
    ||||||||||||||||||||||||||| | ||| ||||| |||||||||| ||||    
T  2572106 aataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtgtc 2572052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 8342981 - 8343030
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  8342981 aataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 8343030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 20873078 - 20873127
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  20873078 aataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 20873127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 15816188 - 15816130
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||| ||||||||||||||||||||||||| | ||| || || ||||||||||    
T  15816188 gacacaactaa-taatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtc 15816130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 18170541 - 18170483
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||| |||| ||||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  18170541 gacacaattaaa-aatttgaaaaaattacataattcaatgtaattacaaatgtcggtgtc 18170483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 18634109 - 18634051
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||| |||| ||||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  18634109 gacacaattaaa-aatttgaaaaaattacataattcaatgtaattacaaatgtcggtgtc 18634051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 4948661 - 4948710
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||| | | ||| ||||| ||||||||||    
T  4948661 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtc 4948710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 8343325 - 8343374
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||||| | ||| ||||| |||| |||||    
T  8343325 aataatttgaaaaaatcacataatttagtgtaattacaagtgtcagtgtc 8343374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 21465399 - 21465475
Alignment:
Q  219 cggacacgacacagacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 296  Q
    |||||||||||| |||||| |||| |||||||||||||||| ||||||  || ||| ||||| ||| |||||| ||||    
T  21465399 cggacacgacacggacacagctaa-taatttgaaaaaatcatataattcgatgtaattacaagtgttggtgtcgtgtc 21465475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 25566850 - 25566899
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||| | | ||| ||||| ||||||||||    
T  25566850 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtc 25566899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 41831990 - 41831946
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcg 286  Q
    ||||||||||||||||||||||||| | | ||||||||| |||||    
T  41831990 aataatttgaaaaaatcacataattcagtgtaactacaagtgtcg 41831946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 7438715 - 7438771
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||||||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  7438715 aataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcgg 7438771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 9778510 - 9778569
Alignment:
Q  243 ataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    |||||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||||||    
T  9778510 ataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcgtgtcggacac 9778569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 6028634 - 6028688
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 296  Q
    ||||||||||||| || |||||||||||| ||| |||||||||||||||| ||||    
T  6028634 aataatttgaaaatataacataatttaatgtaattacaaatgtcggtgtcgtgtc 6028688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 11061126 - 11061076
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtca 292  Q
    ||||||||||||||||||||||||||| | ||| ||||| |||||||||||    
T  11061126 aataatttgaaaaaatcacataatttagtataattacaagtgtcggtgtca 11061076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 11665499 - 11665434
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||| ||||||||||||||||||||||| | ||||| || || ||||| |||||||||||    
T  11665499 gacacaactaa-taatttgaaaaaatcacataattcagtctaattataagtgtcgatgtcatgtcgg 11665434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 32094079 - 32094010
Alignment:
Q  233 acacaactaaataatttgaaaaaa-tcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    |||||||||| ||||||||||||| |||||||||| | | ||| |||||||||||||||| ||||||||||    
T  32094079 acacaactaa-taatttgaaaaaaatcacataattcagtgtaattacaaatgtcggtgtcgtgtcggacac 32094010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 9408384 - 9408335
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  9408384 aataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 9408335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 3991319 - 3991382
Alignment:
Q  227 acacagacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    |||| ||||||||||| ||||||||||||||||||||||| | | ||| ||||| ||||||||||    
T  3991319 acaccgacacaactaa-taatttgaaaaaatcacataattcagtataattacaagtgtcggtgtc 3991382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 5409886 - 5409826
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    ||||||||||||||||||||||||| | |  || ||||| |||||||||| ||||||||||    
T  5409886 aataatttgaaaaaatcacataattcagtgcaattacaagtgtcggtgtcgtgtcggacac 5409826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 24339651 - 24339707
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||    
T  24339651 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcgg 24339707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 18215236 - 18215172
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacaccggg 306  Q
    ||||||||||||||||||||||||  | | ||  ||||| |||||||||| |||| |||||||||    
T  18215236 aataatttgaaaaaatcacataatgcagtgtagttacaagtgtcggtgtcgtgtccgacaccggg 18215172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 26033511 - 26033455
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||||||||||||||||| | | ||| ||||| ||||||| || ||||||    
T  26033511 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtctcgtgtcgg 26033455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 38143232 - 38143260
Alignment:
Q  242 aataatttgaaaaaatcacataatttaat 270  Q
    |||||||||||||||||||||||||||||    
T  38143232 aataatttgaaaaaatcacataatttaat 38143260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 43027519 - 43027459
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    ||||||||||||||||||||||||  | | ||| ||||| |||||||||| |||| |||||    
T  43027519 aataatttgaaaaaatcacataatgcagtgtaaatacaagtgtcggtgtcgtgtcagacac 43027459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 24613760 - 24613695
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||| |||||||| |||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  24613760 gacacaactaa-taatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcgg 24613695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 12895166 - 12895106
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    ||||||||||||||||||||||||| ||  ||| ||||| |||||||||| ||||||||||    
T  12895166 aataatttgaaaaaatcacataattcaaagtaattacaagtgtcggtgtcgtgtcggacac 12895106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 328
Target Start/End: Original strand, 37203251 - 37203358
Alignment:
Q  219 cggacacgacacagacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacaccggggcacatataatc 318  Q
    ||||||||||||||||||  |||| |||||||||||||| |||||||||| | ||| ||||| |||  |||||  ||| ||||||||| ||| | |||||    
T  37203251 cggacacgacacagacacggctaa-taatttgaaaaaatgacataatttagtgtaattacaagtgt-agtgtcgggtccgacaccgggacacgtctaatc 37203348  T
Q  319 caagaagtgt 328  Q
    | ||||||||    
T  37203349 cgagaagtgt 37203358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 6485661 - 6485613
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgt 290  Q
    ||||||||||||||||||||||||||| | ||| ||||| |||||||||    
T  6485661 aataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgt 6485613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 21720557 - 21720497
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    |||||||||| ||||||| |||||||||| |||||| | ||||||||||| ||| ||||||    
T  21720557 aataatttgataaaatcatataatttaatgtaactatatatgtcggtgtcttgttggacac 21720497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 23293036 - 23292987
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||| | | ||| ||||| ||||||||||    
T  23293036 aataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtc 23292987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 3947816 - 3947756
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    ||||||||||||||||| ||||||| | | ||| ||||| |||| ||||| ||||||||||    
T  3947816 aataatttgaaaaaatcgcataattcagtgtaattacaagtgtcagtgtcgtgtcggacac 3947756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 29205453 - 29205501
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgt 290  Q
    ||||||||||||||||||||||||| | | ||| ||||| |||||||||    
T  29205453 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgt 29205501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 403914 - 403865
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||||    
T  403914 aataatttgaaaaaatcacataatttagtgtaactacaagtgtcggtgtc 403865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 426564 - 426515
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||| ||| ||| ||||| ||||||||||    
T  426564 aataatttgaaaaaatcacataattaaatgtaattacaagtgtcggtgtc 426515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 10770732 - 10770664
Alignment:
Q  233 acacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    |||||||||| ||||||||||||||||||||||| | | ||| ||||| |||||||||| |||| |||||    
T  10770732 acacaactaa-taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcagacac 10770664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 5970158 - 5970102
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||||||||||||||||| | | ||| ||||||||| |||||| ||||||    
T  5970158 aataatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcgg 5970102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 16766706 - 16766762
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||    
T  16766706 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcgg 16766762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 34595134 - 34595192
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||| ||||||||||||||||||||||| | | ||| ||||| ||||||||||    
T  34595134 gacacaactaa-taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtc 34595192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 17841639 - 17841590
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||||| | ||| ||||| || |||||||    
T  17841639 aataatttgaaaaaatcacataatttagtgtaattacaagtgacggtgtc 17841590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 9107420 - 9107364
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    |||||||||||||||||||| |||| | | ||| ||||| |||||||||| ||||||    
T  9107420 aataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcgg 9107364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 12696333 - 12696393
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    |||||||||||||||| |||||||| | | ||| ||||| |||| ||||| ||||||||||    
T  12696333 aataatttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcgtgtcggacac 12696393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 17808 - 17750
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||| ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  17808 gacacaactaa-taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 17750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 1509523 - 1509597
Alignment:
Q  216 atacggacacgacacagacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    |||| |||| ||||| |||||| |||| ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  1509523 atacagacaggacactgacacagctaa-taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 1509597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 55401075 - 55401133
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||| ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  55401075 gacacaactaa-taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 55401133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 39756245 - 39756299
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 296  Q
    |||||||| |||||||||||||||||||| ||| ||||| |||||||||| ||||    
T  39756245 aataatttaaaaaaatcacataatttaatataattacaagtgtcggtgtcgtgtc 39756299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 49651836 - 49651778
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggac 300  Q
    ||||||||||||||||||||||||| | | ||| ||||| |||||||||| ||||||||    
T  49651836 aataatttgaaaaaatcacataattcactgtaattacaagtgtcggtgtcgtgtcggac 49651778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 51206429 - 51206354
Alignment:
Q  216 atacggacacg-acacagacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||||||||||| | | ||| ||||| ||||||||||    
T  51206429 atacggacacggacactgacacagctaa-taatttgaaaaaatcacataattcagtgtaaatacaagtgtcggtgtc 51206354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 10268536 - 10268486
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtca 292  Q
    ||||||||||||||||||||||||||| | ||| ||||| |||| ||||||    
T  10268536 aataatttgaaaaaatcacataatttagtgtaattacaagtgtcagtgtca 10268486  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 35222498 - 35222532
Alignment:
Q  243 ataatttgaaaaaatcacataatttaatctaacta 277  Q
    |||||||||||||||||||||||| ||||||||||    
T  35222498 ataatttgaaaaaatcacataattcaatctaacta 35222532  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 28918010 - 28918059
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||| | | ||| ||||| ||||||||||    
T  28918010 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtc 28918059  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 14832108 - 14832164
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||||||||||||||| | ||| ||| ||||| |||| ||||| ||||||    
T  14832108 aataatttgaaaaaatcacataactcaatgtaattacaagtgtcagtgtcgtgtcgg 14832164  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 25948937 - 25948877
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    ||||||||||||||||||||||||| | | ||| || || ||| |||||| ||||||||||    
T  25948937 aataatttgaaaaaatcacataattcagtgtaattataagtgttggtgtcgtgtcggacac 25948877  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 30335417 - 30335475
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||| |||||||||||||| |||||||||| | ||| ||||||||||||||||    
T  30335417 gacacaactaa-taatttgaaaaaatgacataatttagtgtaattacaaatgtcggtgtc 30335475  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 15657873 - 15657922
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||| ||||||||||||||| | | ||| ||||||||||||||||    
T  15657873 aataatttgtaaaaatcacataattcagtgtaattacaaatgtcggtgtc 15657922  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 18256030 - 18255981
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    |||||||| |||||||||||||||||||| ||| || || ||||||||||    
T  18256030 aataatttaaaaaaatcacataatttaatgtaattagaagtgtcggtgtc 18255981  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 20539724 - 20539675
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    |||||||||||||||||| |||||||| | ||| ||||| ||||||||||    
T  20539724 aataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtc 20539675  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 37558986 - 37559035
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||| ||||||||||||||| ||| ||| ||||| ||||||||||    
T  37558986 aataatttgtaaaaatcacataattcaatgtaattacaagtgtcggtgtc 37559035  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 39026827 - 39026884
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgga 299  Q
    ||||| |||| ||||||||||| |||||| ||| || |||||||||||| ||||||||    
T  39026827 aataacttgagaaaatcacatattttaatgtaattataaatgtcggtgttatgtcgga 39026884  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 18841072 - 18841013
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtca 292  Q
    ||||||||||| |||||||||||||| |||||||| | | ||| ||||| |||||||||||    
T  18841072 gacacaactaa-taatttgaaaaaattacataattaagtgtaattacaagtgtcggtgtca 18841013  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 22881675 - 22881617
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||| ||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  22881675 gacacaactaa-taatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 22881617  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 22515937 - 22515888
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  22515937 aataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 22515888  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 38078711 - 38078662
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||| ||| ||| ||||| ||||||||||    
T  38078711 aataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtc 38078662  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 1486759 - 1486699
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcggacac 302  Q
    ||||||||||||||||||||||||| | | ||| || || |||||||||| ||||||||||    
T  1486759 aataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacac 1486699  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 24577245 - 24577182
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtc 296  Q
    ||||||||||| ||||||||||||||||||||||| | | ||| ||||| |||||||||| ||||    
T  24577245 gacacaactaa-taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtc 24577182  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 32461513 - 32461465
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgt 290  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||| |||||    
T  32461513 aataatttgaaaaaatcacataatttaatgtaattacaagtgttggtgt 32461465  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 40258983 - 40258933
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtca 292  Q
    ||||||||||||||||||||||||| | | ||| ||||| |||||||||||    
T  40258983 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtca 40258933  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 5927390 - 5927341
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    |||||||||||||||||| |||||||||| ||| ||||| |||| |||||    
T  5927390 aataatttgaaaaaatcatataatttaatgtaattacaagtgtcagtgtc 5927341  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 9103649 - 9103697
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  9103649 aataatttgaaaaaatcacataatttagtttaa-tacaagtgtcggtgtc 9103697  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 18337338 - 18337387
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||| | | ||| ||||| ||||||||||    
T  18337338 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtc 18337387  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 46348433 - 46348384
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    |||||||||||||||||| |||||||| | ||| ||||| ||||||||||    
T  46348433 aataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtc 46348384  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 16164365 - 16164337
Alignment:
Q  242 aataatttgaaaaaatcacataatttaat 270  Q
    |||||||||||||||||||||||||||||    
T  16164365 aataatttgaaaaaatcacataatttaat 16164337  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 47989506 - 47989562
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    |||||||| |||||||||||||||| | | ||| ||||| |||||||||| ||||||    
T  47989506 aataatttaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcgg 47989562  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 46691 - 46740
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtc 291  Q
    ||||||||||||||||||||||||| | | ||| ||||||||||||||||    
T  46691 aataatttgaaaaaatcacataattcagtgtaattacaaatgtcggtgtc 46740  T

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Target: scaffold0450 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 8694 - 8629
Alignment:
Q  232 gacacaactaaataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||| ||||||||||| |||||||||||   | ||| |||||||||||||||| ||||||    
T  8694 gacacaactaa-taatttgaaaatatcacataattcggtataattacaaatgtcggtgtcgtgtcgg 8629  T

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Target: scaffold0223 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 20181 - 20237
Alignment:
Q  242 aataatttgaaaaaatcacataatttaatctaactacaaatgtcggtgtcatgtcgg 298  Q
    ||||||||||||||||||||||||| | | ||| ||||| |||| ||||| ||||||    
T  20181 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcgg 20237  T

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