View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17775_low_31 (Length: 257)

Name: NF17775_low_31
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17775_low_31
NF17775_low_31
[»] chr3 (5 HSPs)
chr3 (9-181)||(25130353-25130516)
chr3 (191-257)||(20549392-20549458)
chr3 (196-257)||(1402653-1402714)
chr3 (196-257)||(44910700-44910761)
chr3 (196-257)||(46315962-46316023)
[»] chr8 (3 HSPs)
chr8 (196-252)||(43290877-43290933)
chr8 (191-257)||(40380279-40380345)
chr8 (196-257)||(9985685-9985746)
[»] chr1 (3 HSPs)
chr1 (193-257)||(34395926-34395990)
chr1 (191-251)||(16234307-16234367)
chr1 (191-257)||(7078507-7078573)
[»] chr4 (3 HSPs)
chr4 (196-257)||(24772674-24772735)
chr4 (196-257)||(12694435-12694496)
chr4 (196-257)||(23347778-23347839)
[»] chr7 (2 HSPs)
chr7 (191-257)||(7990077-7990143)
chr7 (196-257)||(40207807-40207868)
[»] chr5 (2 HSPs)
chr5 (185-251)||(14522977-14523043)
chr5 (191-257)||(29803223-29803289)
[»] chr2 (4 HSPs)
chr2 (191-257)||(16447253-16447319)
chr2 (196-257)||(14713989-14714050)
chr2 (196-257)||(23344996-23345057)
chr2 (184-257)||(42251927-42252000)
[»] scaffold0002 (1 HSPs)
scaffold0002 (196-257)||(6430-6491)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 25130353 - 25130516
Alignment:
Q  9 cttcaatgggttcgttgggattcttgtataaggaatccatggcttctttggacttgggagttctttggttggagaagttaaggaagttaaagaaggacat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||    
T  25130353 cttcaatgggttcgttgggattcttgtataaggaatccatggcttctttggacttgggagttctttggttggagaag---------ttaaagaaggacat 25130443  T
Q  109 ctatagataaagtccgcgacaacaactgcggttgttttgtgtttctttcatgtacaaaaggacaagacaaacg 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25130444 ctatagataaagtccgcgacaacaactgcggttgttttgtgtttctttcatgtaaaaaaggacaagacaaacg 25130516  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 20549458 - 20549392
Alignment:
Q  191 aagataaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    |||| ||||||||||| ||||||||||||| || || ||||  ||||  ||||||||||||||||||    
T  20549458 aagagaaatgatatttgtacatctattttatgataatttttgtataacattctctctcatattcaca 20549392  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 1402653 - 1402714
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    ||||||||||| |||||| |||||| ||||||||||  | || ||||||||||||| |||||    
T  1402653 aaatgatatttgtacatccattttatgacaacttttgtacaaccttctctctcatactcaca 1402714  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 44910700 - 44910761
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    ||||||||||| |||||  |||||| || |||||||  |||||||||||||||||| |||||    
T  44910700 aaatgatatttgtacattcattttatgataacttttgtataatcttctctctcatactcaca 44910761  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 46316023 - 46315962
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    ||||||||||| |||| | | |||| ||||||||||| |||||||||||| ||||| |||||    
T  46316023 aaatgatatttgtacaaccactttatgacaactttttgataatcttctctttcatactcaca 46315962  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 43290933 - 43290877
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatat 252  Q
    ||||||||||| |||||| | |||| ||||||||||||||||| |||||||||||||    
T  43290933 aaatgatatttgtacatccactttatgacaactttttaataattttctctctcatat 43290877  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 40380279 - 40380345
Alignment:
Q  191 aagataaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    |||| ||||||||||| ||||||||||||| ||||||||||  | ||  |||||||||||| |||||    
T  40380279 aagagaaatgatatttgtacatctattttatgacaacttttgtacaactttctctctcatactcaca 40380345  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 9985746 - 9985685
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    ||||||||||| ||||||||||||| ||||||||||  | ||  |||||||||||| |||||    
T  9985746 aaatgatatttgtacatctattttatgacaacttttatacaacattctctctcatactcaca 9985685  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 34395990 - 34395926
Alignment:
Q  193 gataaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    |||||||||||||| ||||||||||||| |||||||||| || ||  |||||||||||| |||||    
T  34395990 gataaatgatatttgtacatctattttatgacaacttttgaacaactttctctctcatactcaca 34395926  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 16234367 - 16234307
Alignment:
Q  191 aagataaatgatatttctacatctattttaggacaactttttaataatcttctctctcata 251  Q
    |||| ||||||||||| |||||| |||||| ||||||||||  |||| |||||||||||||    
T  16234367 aagaaaaatgatatttgtacatccattttatgacaacttttgtataaccttctctctcata 16234307  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 7078573 - 7078507
Alignment:
Q  191 aagataaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    |||| ||||||||||| ||||||||||||  |||||||||| || ||  |||||||||||| |||||    
T  7078573 aagagaaatgatatttgtacatctattttgtgacaacttttgaacaactttctctctcatactcaca 7078507  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 24772674 - 24772735
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    ||||||||||| |||||| |||||| ||||||||||| | || ||||||||||||| |||||    
T  24772674 aaatgatatttgtacatccattttatgacaactttttgacaaccttctctctcatactcaca 24772735  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 12694496 - 12694435
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    ||||||||||| |||| | |||||  ||||||||||| ||||  ||||||||||||||||||    
T  12694496 aaatgatatttgtacaaccattttgtgacaactttttgataactttctctctcatattcaca 12694435  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 23347778 - 23347839
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    ||||||||||| |||||| | |||  ||||||||||||| ||| |||||||||||| |||||    
T  23347778 aaatgatatttgtacatccactttgtgacaactttttaacaattttctctctcatactcaca 23347839  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 7990077 - 7990143
Alignment:
Q  191 aagataaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    |||| ||||||||||| ||||||||||||| || || ||||| ||||| |||||||| ||| |||||    
T  7990077 aagagaaatgatatttgtacatctattttatgataattttttgataattttctctcttatactcaca 7990143  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 40207868 - 40207807
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    ||||||||||| |||| ||||||| | |||||||||  ||||| |||| |||||||||||||    
T  40207868 aaatgatatttgtacaactatttttgtacaacttttgtataattttctttctcatattcaca 40207807  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 14523043 - 14522977
Alignment:
Q  185 tataacaagataaatgatatttctacatctattttaggacaactttttaataatcttctctctcata 251  Q
    |||||||||| ||||||||||| |||| | ||||| | |||||||||| | ||| ||||||||||||    
T  14523043 tataacaagagaaatgatatttgtacaaccatttttgtacaacttttttacaattttctctctcata 14522977  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 29803223 - 29803289
Alignment:
Q  191 aagataaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    |||| ||||||||||| |||| |||||||  |||||||||| || ||  ||||||||||||||||||    
T  29803223 aagagaaatgatatttgtacaactattttttgacaacttttaaacaactttctctctcatattcaca 29803289  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 16447319 - 16447253
Alignment:
Q  191 aagataaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    |||| ||||||||||| |||| | ||||||  |||| ||||| ||||| ||||||||||||||||||    
T  16447319 aagaaaaatgatatttgtacaaccattttattacaattttttgataattttctctctcatattcaca 16447253  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 14713989 - 14714050
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    ||||||||||| |||||| |||||| |||||||||| || ||  |||||||||||| |||||    
T  14713989 aaatgatatttgtacatcaattttatgacaacttttaaacaacattctctctcatactcaca 14714050  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 23345057 - 23344996
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    ||||||||||| |||||  ||||||  |||||||||| | || |||||||||||||||||||    
T  23345057 aaatgatatttgtacattcattttataacaactttttgacaaccttctctctcatattcaca 23344996  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 42252000 - 42251927
Alignment:
Q  184 ttataacaagataaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    |||||| |||| ||||||||||| ||||   | ||||| |||||||||| ||||  ||||||||||||||||||    
T  42252000 ttataataagagaaatgatatttgtacaatcactttagtacaactttttgataactttctctctcatattcaca 42251927  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 6430 - 6491
Alignment:
Q  196 aaatgatatttctacatctattttaggacaactttttaataatcttctctctcatattcaca 257  Q
    ||||||||||| |||||| |||||| ||||||||||| | ||  |||||||||||| |||||    
T  6430 aaatgatatttgtacatccattttatgacaactttttgacaacattctctctcatactcaca 6491  T

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