View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17775_low_32 (Length: 254)
Name: NF17775_low_32
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 30860950 - 30860721
Alignment:
| Q |
9 |
agtgttgatttaatgtagatttcaaaattatcgcataaatggacagtgcctcatagtgaccataagttccacagatcaaaccctcatcttcccaccccac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30860950 |
agtgttgatttaatgtagatttcaaaattatcgcataaatggacagtgcctcatagtgaccataagttccacagatcaaaccctcatcttcccaccccac |
30860851 |
T |
|
| Q |
109 |
ca---tcaagagaatttgtgaaatatggagaacaaaatcatatccaccaagagtgtccattgtttggtgttgccatttccagcacatggtcacactaatc |
205 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30860850 |
caccatcaagagaatttgtgaaatatggagaacaaaatcatatccaccaagagtgtccattgtttggtgttgccatttccagcacatggtcacactaatc |
30860751 |
T |
|
| Q |
206 |
caatgttagaattctccaagcttttacaac |
235 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
30860750 |
caatgttagaattctccaagcgtttacaac |
30860721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 30818817 - 30818712
Alignment:
| Q |
130 |
atggagaacaaaatcatatccaccaagagtgtccattgtttggtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagcttt |
229 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30818817 |
atggagaataaaaccatatccaccaagagtgttcattgtttggtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagcttt |
30818718 |
T |
|
| Q |
230 |
tacaac |
235 |
Q |
| |
|
|||||| |
|
|
| T |
30818717 |
tacaac |
30818712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 30856577 - 30856505
Alignment:
| Q |
163 |
cattgtttggtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagcttttacaac |
235 |
Q |
| |
|
||||||||||| || |||||||||| || ||||||| |||||| ||| || ||||||||||||||||||||| |
|
|
| T |
30856577 |
cattgtttggtcttatcatttccagctcaaggtcacattaatcccatgctacaattctccaagcttttacaac |
30856505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University