View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_low_5 (Length: 533)
Name: NF17775_low_5
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 4 - 517
Target Start/End: Complemental strand, 469870 - 469352
Alignment:
| Q |
4 |
agaccaatatcgttttttg-atttgagtgcttggtggtataacccttttgtccacattggttattccacatcttgatttcgtttgtttgttcttcttcgt |
102 |
Q |
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| T |
469870 |
agaccaatatggttttttttatttgagtgcttggtggtataacccttttgtccacattggttattccacatcttgatttcgtttgtttgttcttcttcgt |
469771 |
T |
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| Q |
103 |
ttttattaatttgtaattggactagactttgtgttaatgtcattctaggcacaccttgtatttgaatgattttcatcttttttatatacctcttttggct |
202 |
Q |
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| T |
469770 |
ttttattaatttgtaattggactagactttgtgttaa-gtcattccaggcacaccttgtatttgaatgattttcatcttttttatatatctcttttggct |
469672 |
T |
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| Q |
203 |
tattgaaaaaacttttnnnnnnnnnnn--tcaattctttgcacgcttataaatactttttattgagattagaagaatttatgaaatgcgtaaatttcact |
300 |
Q |
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| T |
469671 |
tattgaaaaaaactttaaaaaaaaaaaaatcaattctttgcacgcttataaatactttttattgagattagaagaatttatgaaatgcgtaaatttcact |
469572 |
T |
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| Q |
301 |
ctactcattctaagaatgcaatctcttggattaactaattaccagtcatgaaatagacataacagatccatctttttcaccaaaaatcagaattttgaat |
400 |
Q |
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| T |
469571 |
ctactcattctaagaatgcaatctcttggattaactaattaccagtcatgaaatagacataacagatccatctttttcaccaaaaatcagaattttgaat |
469472 |
T |
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| Q |
401 |
ttggtccaccaacataacatcaaaattatatcataaattaatgaccatttcaatgtgtttatctaagtttgtgacctcgttgttgtaaatgaggtc---t |
497 |
Q |
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| T |
469471 |
ttggtccaccaacataacatcaaaattatatcataaattaatgaacatttcaatgtgtttatctaagtttgtgacctcgttgttgtaaatgaggtcttgt |
469372 |
T |
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| Q |
498 |
tgtggcactgaatggcatga |
517 |
Q |
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| T |
469371 |
tgtggcactgactggcatga |
469352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 12312551 - 12312592
Alignment:
| Q |
143 |
cattctaggcacaccttgtatttgaatgattttcatcttttt |
184 |
Q |
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| T |
12312551 |
cattctaggcacactttgtgcttgaatgattttcatcttttt |
12312592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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