View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17775_low_6 (Length: 528)
Name: NF17775_low_6
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 7 - 512
Target Start/End: Complemental strand, 55310496 - 55309990
Alignment:
| Q |
7 |
ggccagaaaccattcatacaattcgtggnnnnnnnctcttctttataagcatacaatttgtggttctgtttattccccgtttcattcatatttct-tatt |
105 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55310496 |
ggccagaaaccattcatacaattcgtggttttttcttcttctttataagcatacaatttgtggttctgtttattccccgtttcattcatatttctctatt |
55310397 |
T |
|
| Q |
106 |
ttctttcccatccaactttacatttttcccttatttcagctcaagcctatgcttaccatcaaacaggtataccatccctcttccttatgtttttatatct |
205 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
55310396 |
ttctttcccatccaactttacattttttccttatttcagctcaagcctatgcttaccatcaaacaggtatatcatccctcttccttatgtttttatatct |
55310297 |
T |
|
| Q |
206 |
ttgttatatttctcttaatagt-aaaccacttctttctattaattcatttcttggttatttttgaagggagcaatatcatattatatcatggttcaaaca |
304 |
Q |
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| T |
55310296 |
ttgttatatttctcttaatagttaaaccacttctttctattaattcatttcttggttatttt-gaagggagcaatatcatattatatcatggttcaaaca |
55310198 |
T |
|
| Q |
305 |
tgttaacggtttatgctccaagagctattctaaacttccatctataccaagactcatcttcaacgcaacaaacatattattcatacaagatcaataatgt |
404 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55310197 |
tgttaacgatttatgctccaagagctattctaaacttccatctataccaagactcatcttcaacgcaacaaacatattattcatacaagatcaataatgt |
55310098 |
T |
|
| Q |
405 |
taatttcataaatttccatcctgcttttcctaaactttatggaagtccttgtagtaacatatttcttagttcatccttctcttggaattgtgaaaagcga |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55310097 |
taatttcataaatttccatcctgcttttcctaaactttatggaagtccttgtagtaacatatttcttagttcatccttctcttggaattgtgaaaagcga |
55309998 |
T |
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| Q |
505 |
cacaaatg |
512 |
Q |
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| T |
55309997 |
cacaaatg |
55309990 |
T |
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