View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17775_low_9 (Length: 438)
Name: NF17775_low_9
Description: NF17775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17775_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 527431 - 527025
Alignment:
| Q |
16 |
atacatgtagttagttggtcaaaattaccttgagtgaagtgcgcctgttctgaaaccaaaacttgatttgcgttgggtctaacccagtccgaaggctcag |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
527431 |
atacatgtagttagttggtcaaagttaccttcagtgaagtgcgcctgttctgaaaccaaaacttgatttgcgttgggtctaacccagtccgaaggctcag |
527332 |
T |
|
| Q |
116 |
ctctcttctctgagcatcattaggattaggacactgcttgaagaaactgatgacaaaa-ccaagttcaaaaaatatggagcaaagtaaagnnnnnnnnnn |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
527331 |
ctctcttctctgagcatcattaggattaggacactgcttgaagaagctgatgacaaaaaccaagttcaaaaaatatggagcaa-gtaaagatatattata |
527233 |
T |
|
| Q |
215 |
nnnnngatcacatatt---cttattcaaatgaaatatataaaaatggttcctacgtatccatttcatcaatttgttgctgtgtgtggcggcgatatgtcc |
311 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
527232 |
tatatgatcacatattaatcttattcagatgaaatatataaaaatggttcctacgtatccatttcatcaatttgttgctgtgtgtggcggcgatatgtcc |
527133 |
T |
|
| Q |
312 |
tttttctgcgacgttggttggattcttggtcatcatcacttgaaggagcctccatgttcatttggtttgcttcttctcttgtccttgttgacctattctg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
527132 |
tttttctgcgacgttggttggattcttggtc---atcacttgaaggagcctccatgttcatttggtttgcttcttctcttgtccttgttgacctattctg |
527036 |
T |
|
| Q |
412 |
atacatgttct |
422 |
Q |
| |
|
||||||||||| |
|
|
| T |
527035 |
atacatgttct |
527025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University