View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17777_high_1 (Length: 777)
Name: NF17777_high_1
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 438 - 769
Target Start/End: Complemental strand, 38611569 - 38611243
Alignment:
| Q |
438 |
gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcggccaagcacatcattaaaagttaatactactatactactcaatctgaataa |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38611569 |
gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcagccaagcacatcattaaaagttaatactacta-----ctcaatctgaataa |
38611475 |
T |
|
| Q |
538 |
acttgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatga |
637 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38611474 |
acttgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatga |
38611375 |
T |
|
| Q |
638 |
caactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatacctttt |
737 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38611374 |
caactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatacctttt |
38611275 |
T |
|
| Q |
738 |
ttctacttttgcagttcatcacaggttctgct |
769 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| |
|
|
| T |
38611274 |
ttttacttttgcagttcatcacagtttctgct |
38611243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 50 - 379
Target Start/End: Complemental strand, 38612044 - 38611715
Alignment:
| Q |
50 |
cacttacatggtattgcaaaaacacatatattagtttgaaattgaaaggggaacatgaaatgaaaagttgaccttctccttccgattacaaaaatacatg |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38612044 |
cacttacatggtattgcaaaaacacatatattagtttgaaattgaaaggggagcatgaaatgaaaagttgaccttctccttccgattacaaaaatacatg |
38611945 |
T |
|
| Q |
150 |
ttattcccgacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaacattgagatatccacagccannnnnnnnnnnnnnnnnn |
249 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38611944 |
gtattccccacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaacattgagatatccacagccagtttgttgttgttgttgt |
38611845 |
T |
|
| Q |
250 |
nacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttca |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38611844 |
tacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttca |
38611745 |
T |
|
| Q |
350 |
tcttcaattagggatattagcaaaacattt |
379 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
38611744 |
tcatcaattagggatattagcaaaacattt |
38611715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 578 - 732
Target Start/End: Complemental strand, 34726741 - 34726587
Alignment:
| Q |
578 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
677 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||| ||||||| |||| | |||||||||||||| |
|
|
| T |
34726741 |
aaatgctgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacaactttcaaatcacaatgcaaggcgccgtaaatatcatc |
34726642 |
T |
|
| Q |
678 |
ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac |
732 |
Q |
| |
|
| || ||||||||||||| ||||| |||||||||| |||| | |||||||||| |
|
|
| T |
34726641 |
gtcaagctgtccaatcaagccaatcggctttgtcttattcacgcagtggtaatac |
34726587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 578 - 732
Target Start/End: Complemental strand, 34721613 - 34721459
Alignment:
| Q |
578 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
677 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||| ||||||| |||||| |||| | |||||| || || |
|
|
| T |
34721613 |
aaatactgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctc |
34721514 |
T |
|
| Q |
678 |
ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac |
732 |
Q |
| |
|
| || ||| ||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
34721513 |
gtaaaactgcccaatcaagtcaatcagctttgtcttcgtcaccctgtggtaatac |
34721459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 581 - 714
Target Start/End: Complemental strand, 34730952 - 34730819
Alignment:
| Q |
581 |
tgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctg |
680 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| | ||||| |||| |||| |
|
|
| T |
34730952 |
tgctgaaggttccacaatctggctgagttcgatgaaaagaaaagaagctgcagagaacaactttcacgtcacaatgcaaggcgacgtaagcatcagcctg |
34730853 |
T |
|
| Q |
681 |
aatctgtccaatcaagtcaatcagctttgtcttc |
714 |
Q |
| |
|
|| | |||||||||||||||||| ||||||||| |
|
|
| T |
34730852 |
aagcactccaatcaagtcaatcagttttgtcttc |
34730819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 491 - 569
Target Start/End: Complemental strand, 34726843 - 34726770
Alignment:
| Q |
491 |
agcacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttggatggtgttgaataa |
569 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
34726843 |
agcacatcattaaaagttaatattaata-----ctcaatctgattcaacttgctgtcttttttggatggtgttgaataa |
34726770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 311 - 375
Target Start/End: Complemental strand, 34722229 - 34722165
Alignment:
| Q |
311 |
tctacatcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaac |
375 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
34722229 |
tctacatcagggagttcgaaatcagattcaatcagttcatcaccaactagggatattagcaaaac |
34722165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 519 - 564
Target Start/End: Complemental strand, 34730996 - 34730951
Alignment:
| Q |
519 |
tactactcaatctgaataaacttgctgtcttttttggatggtgttg |
564 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
34730996 |
tactactcagtctgattaaacttgctgtcttttttgaatggtgttg |
34730951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 556
Target Start/End: Complemental strand, 34721713 - 34721655
Alignment:
| Q |
493 |
cacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttgga |
556 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
34721713 |
cacatcattaaaagttaata-----ttactactcaatctgattcaacttgctgtcttttttgga |
34721655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 34731519 - 34731457
Alignment:
| Q |
315 |
catcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaacat |
377 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||||||| | || |||| ||| ||||||||||| |
|
|
| T |
34731519 |
catcaaggagttcaaaatcagcttcaaatagttcatcgttaaataggaataatagcaaaacat |
34731457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University