View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_high_14 (Length: 369)
Name: NF17777_high_14
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 360
Target Start/End: Original strand, 50506890 - 50507230
Alignment:
| Q |
20 |
atagtcatttgcaaatatgtcactttttaccgtttgtaatatctgtgagtattaagattggtcaatattcattttactccttattacaaagagctacaag |
119 |
Q |
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| T |
50506890 |
atagtcatttgcaaatatgtcactttttaccgtttgtaatatctgtgagtattaagattggtcaatattcattttagtccttattacaaagagctacaag |
50506989 |
T |
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| Q |
120 |
caaatcttctacctatgacaagaacaaatctgatactaaaacaaagcaaccaaaatcaaaaacagaaaattgtgtatttttaatgactagcaacaaaaat |
219 |
Q |
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| T |
50506990 |
caaatcttctacctatgacaagaacaaatatgatactaaaacaaagcaaccaaaatcaaaaacagaaaattgtgtatttttaatgactagcaacaaaaat |
50507089 |
T |
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| Q |
220 |
aaatagaggactaaaatcaaaattctcgatatttgtaaggatcgtttacataaattagattacctcgctatctgaaaccatacgacgccattcatgaata |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50507090 |
aaatagaggactaaaatcaaaattctcgatatttgtaaggatcgtttacataaattagattacctcgctatctgaaaccatacgacgccattcatgaata |
50507189 |
T |
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| Q |
320 |
acggcaggagatacgtaaacctccttacgaatgatgatgtc |
360 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||| |
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| T |
50507190 |
acggcaggagatacataaacctccttacgaatgatggtgtc |
50507230 |
T |
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