View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_high_15 (Length: 358)
Name: NF17777_high_15
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 37361805 - 37361473
Alignment:
| Q |
18 |
gttaatattcgtgttaagtttatccttcgcatgccaattatttttccnnnnnnnnnnnnnnnnnntagatggttcatgcctccttattatttgagctgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37361805 |
gttaatattcgtgttaagtttatccttcgcatgccaattatttttccaaaaataaaaaattaaaatagatggttcatgcctccttattatttgagctgaa |
37361706 |
T |
|
| Q |
118 |
atgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagactttgccata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37361705 |
atgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagactttgccata |
37361606 |
T |
|
| Q |
218 |
gcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaagtaactcgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37361605 |
gcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaagtaactcag |
37361506 |
T |
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| Q |
318 |
ttgtactattcatcaatacctgtgtcctttgct |
350 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
37361505 |
ttgtactattcatcaatacctgtgtcctttgct |
37361473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 37366256 - 37366588
Alignment:
| Q |
18 |
gttaatattcgtgttaagtttatccttcgcatgccaattatttttccnnnnnnnnnnnnnnnnnntagatggttcatgcctccttattatttgagctgaa |
117 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37366256 |
gttaatattcttgttaagtttatccttcgcatgccaattatttttccaaaaattaaaaattaaaatagatggttcatgcctccttattatttgagctgaa |
37366355 |
T |
|
| Q |
118 |
atgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagactttgccata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37366356 |
atgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagactttgccata |
37366455 |
T |
|
| Q |
218 |
gcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaagtaactcgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37366456 |
gcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaagtaactcag |
37366555 |
T |
|
| Q |
318 |
ttgtactattcatcaatacctgtgtcctttgct |
350 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
37366556 |
ttgtactattcatcaatacctgtgtcctttgct |
37366588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 92 - 347
Target Start/End: Complemental strand, 37376563 - 37376298
Alignment:
| Q |
92 |
catgcctccttattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctc |
191 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
37376563 |
catgcctctatattattggagctgaaatgattaatctctagtagggtcggattcgtcataatttcatatgtggcaggatcgatcctccgcacatcgcctc |
37376464 |
T |
|
| Q |
192 |
catacataaggggagactttgccatagcccacaaagtcatctgtgagataataataaattgatcagaata---tatcataatgcatgc------aagcac |
282 |
Q |
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|||||||||| ||||| ||||| | |||||||| |||||||||||| |||||||| |||| | | ||||| ||||||||||||||| || ||| |
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| T |
37376463 |
catacataagaggagattttgcaaaagcccacagagtcatctgtgatataataatgaattca-ctgaatagtctatcataatgcatgcattgcaaaacac |
37376365 |
T |
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| Q |
283 |
ataattgcataaaaatatataagaaagtaactcggttgtactattcatca--atacctgtgtccttt |
347 |
Q |
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|| ||||||| ||| |||||||| |||||||| ||| | ||||| |||| ||||||||||||||| |
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| T |
37376364 |
atgattgcatggaaagatataagagagtaactcagttatgctatttatcaatatacctgtgtccttt |
37376298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 102 - 251
Target Start/End: Complemental strand, 37383915 - 37383766
Alignment:
| Q |
102 |
tattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataag |
201 |
Q |
| |
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||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
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| T |
37383915 |
tattattggagctgaaatgattaatctctagtagggttggattcgtgataatttcatatgtggccggatcgattctccgcacatcgcctccatacataag |
37383816 |
T |
|
| Q |
202 |
gggagactttgccatagcccacaaagtcatctgtgagataataataaatt |
251 |
Q |
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|||||| ||||||| |||||||| |||||||||||| |||||||| |||| |
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| T |
37383815 |
gggagattttgccaaagcccacagagtcatctgtgatataataatgaatt |
37383766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 92 - 284
Target Start/End: Original strand, 37408685 - 37408878
Alignment:
| Q |
92 |
catgcctccttattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctc |
191 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||| | | |||||||||||||||||||| ||||||||| ||||||||||| || |||||||| |
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| T |
37408685 |
catgcctctatattatttgagttgaaaaaattaatctctggcactgtaggattcgtgataatttcgtatgtggcagggtcgatcttccgcatatcgcctc |
37408784 |
T |
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| Q |
192 |
catacataaggggagactttgccatagcccacaaagtcatctgtgagataataataaattga-tcagaatatatcataatgcatgcaagcacat |
284 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||| |||||||| ||| ||| | ||||| | ||||||||||||||||| ||||| |
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| T |
37408785 |
catacataaggggagactttgccaaagcccataaagtcatctatgagataacaatgaatccactcagagtctatcataatgcatgcaatcacat |
37408878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 104 - 284
Target Start/End: Original strand, 41228611 - 41228792
Alignment:
| Q |
104 |
ttatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggg |
203 |
Q |
| |
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||||| |||||||||| |||||| || || | ||||||||| ||||||||||||||||||||| ||||||||||| || || |||||||||||||||| |
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| T |
41228611 |
ttattagagctgaaataattaatttctagcacggtaggatttgtgataatttcatatgtggcagggtcgatcttccgcatgtcacctccatacataaggg |
41228710 |
T |
|
| Q |
204 |
gagactttgccatagcccacaaagtcatctgtgagataataataaattga-tcagaatatatcataatgcatgcaagcacat |
284 |
Q |
| |
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|||||||||||| |||||| |||||||||| |||||||| ||| |||| | ||| ||| ||||||||||||||||| ||||| |
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|
| T |
41228711 |
gagactttgccagagcccataaagtcatctatgagataacaatgaattcactcaaaatctatcataatgcatgcaatcacat |
41228792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 39246425 - 39246281
Alignment:
| Q |
92 |
catgcctccttattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctc |
191 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||||||| || | ||| ||||| ||||| | || ||||| | || ||||||| |||||||| | |
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| T |
39246425 |
catgcctccatattatttgagctaaaaaaattaatctccagaagggtgggatttgtgatgagatcgtatgttgtgggatcaatcttccgtacatcgcccc |
39246326 |
T |
|
| Q |
192 |
catacataaggggagactttgccatagcccacaaagtcatctgtg |
236 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
39246325 |
catacataaggggagactttgccattgcccacagggtcatctgtg |
39246281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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