View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_high_16 (Length: 357)
Name: NF17777_high_16
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 3562843 - 3563173
Alignment:
| Q |
10 |
attatactgttttagacttaaagtatacttttcacatgacaagtagcaaaatcccataaaatcccatagatatcccatagtattaaaaacnnnnnnngtt |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3562843 |
attatattgttttagacttaaagtatacttttcacatgacaagtagcaaaatcccataaaatcccatagatatcccatagtattaaaaactttttttgtt |
3562942 |
T |
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| Q |
110 |
gagagcaaacatgtcaagtattatagcagctattgttcacacaatcaaaagtaatgtgaaactatttgattagttaattaatagagagagcatttgaatt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |
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| T |
3562943 |
gagagcaaacatgtcaagtattatagcagctattgttcacacaatcaaaagtaatgtgaaactatttggttagttaattaataaagagagcatttgcatt |
3563042 |
T |
|
| Q |
210 |
gcttcattgtgtggctataatatcttccaacttcactgtgttggctattttgcattgcttccaaaaataatccgtagaatgtgtcaatatggtagaatga |
309 |
Q |
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| T |
3563043 |
gcttcattgtgtggctataatagcttccaacttcactgtg-tggctattttgcattgcttccaaaaataatccgtagaatgtgtcaatatggtagaatga |
3563141 |
T |
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| Q |
310 |
catattgacatacaatagaataaacttgtttt |
341 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3563142 |
catattgacatacaatagaataaacttgtttt |
3563173 |
T |
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