View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17777_high_19 (Length: 322)

Name: NF17777_high_19
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17777_high_19
NF17777_high_19
[»] chr4 (3 HSPs)
chr4 (15-293)||(25109594-25109871)
chr4 (135-292)||(3938158-3938315)
chr4 (135-292)||(45066794-45066951)
[»] chr5 (5 HSPs)
chr5 (135-292)||(39045152-39045309)
chr5 (135-292)||(7280100-7280257)
chr5 (175-292)||(41093253-41093370)
chr5 (195-292)||(41701168-41701265)
chr5 (209-303)||(38245838-38245932)
[»] chr1 (2 HSPs)
chr1 (20-129)||(45516590-45516699)
chr1 (20-129)||(44093782-44093891)
[»] chr7 (4 HSPs)
chr7 (135-292)||(33631372-33631529)
chr7 (135-292)||(18261292-18261449)
chr7 (135-292)||(33623268-33623425)
chr7 (59-129)||(16768109-16768179)
[»] chr3 (4 HSPs)
chr3 (135-292)||(3423203-3423360)
chr3 (135-292)||(22163917-22164074)
chr3 (20-129)||(49147877-49147986)
chr3 (196-292)||(30273030-30273126)
[»] chr2 (4 HSPs)
chr2 (16-129)||(35296964-35297077)
chr2 (20-129)||(14688491-14688600)
chr2 (219-292)||(465709-465782)
chr2 (209-292)||(45296392-45296475)
[»] chr8 (5 HSPs)
chr8 (20-127)||(29259107-29259214)
chr8 (20-129)||(13821265-13821374)
chr8 (195-292)||(28574263-28574360)
chr8 (135-292)||(28561155-28561312)
chr8 (135-292)||(28566653-28566810)
[»] scaffold0015 (1 HSPs)
scaffold0015 (20-129)||(13900-14009)
[»] chr6 (5 HSPs)
chr6 (20-129)||(16498397-16498506)
chr6 (142-249)||(35164294-35164401)
chr6 (16-74)||(28493627-28493685)
chr6 (16-74)||(29806036-29806094)
chr6 (20-129)||(31932179-31932288)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 25109594 - 25109871
Alignment:
Q  15 tatagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaa 114  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  25109594 tatagacatgaaactgatt-aaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagcaatttccacacaattgaagctaatcgccaa 25109692  T
Q  115 ctttaaaccttgatagtgctatgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||||||| ||||||    
T  25109693 ctttaaaccttgatagtgctatgaaagtcattctcatttattttttacttctgaatttgctgatgctgtgtggacaggttctgcgagatggatgaatatg 25109792  T
Q  215 agcatcaatactagcaactgacagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaac 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25109793 agcatcaatactagcaactgacagtctattttgcattatgttcagtctcattgaaacaaaaacaatggtatgcatcaac 25109871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 292
Target Start/End: Complemental strand, 3938315 - 3938158
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  3938315 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 3938216  T
Q  235 acagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
     || ||||||||||| ||| ||||||||||||| ||||  ||||||||||||||||||    
T  3938215 gcattctattttgcaatatattcagtctcattgtaacagtaacaatggtatgcatcaa 3938158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 292
Target Start/End: Original strand, 45066794 - 45066951
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||| | |||||||||||| |||| || |  | || ||||||| |||||||   ||||||||||||| ||    
T  45066794 atgaaactcattctcacctctttttttcttgtgattatgttgatgctgtttggaaaggtgttgtgggatggatgaatatgattgtcaatactagcaattg 45066893  T
Q  235 acagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
     || |||||||| || ||| ||||||||||||| ||||  ||||||||||||||||||    
T  45066894 gcaatctattttccaatatattcagtctcattgtaacagtaacaatggtatgcatcaa 45066951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 135 - 292
Target Start/End: Complemental strand, 39045309 - 39045152
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||    
T  39045309 atgaaagtcattctcatttattttttacttgtgaatttgttgatgctgtgtggacaggttctatgagatggatgaatatgagcatcaatactagcagctg 39045210  T
Q  235 acagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
    | ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  39045209 agagtctattttgcaatatgttcagtctcattgcaacataaacaatggtatgcatcaa 39045152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 292
Target Start/End: Original strand, 7280100 - 7280257
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||||| || ||||| |||||||| || | ||||||||||||||||||||||  ||||||||||||||||    
T  7280100 atgaaactcattctcacctgtttttttcttgtgaatatgctgatgttgtgtggaaaggtgctatgagatggataaatatgagtgtcaatactagcaactg 7280199  T
Q  235 acagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
     || ||||| ||| | ||||| ||||||||||| ||||  ||||||||||||||||||    
T  7280200 gcaatctatcttgtaatatgtccagtctcattgtaacagtaacaatggtatgcatcaa 7280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 292
Target Start/End: Complemental strand, 41093370 - 41093253
Alignment:
Q  175 tgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactgacagtctattttgcattatgttcagtctcattgcaacaaa 274  Q
    ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| || || ||||||||||| ||| ||||||||||||| ||||      
T  41093370 tgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattggcattctattttgcaatatattcagtctcattgtaacagt 41093271  T
Q  275 aacaatggtatgcatcaa 292  Q
    ||||||||||||||||||    
T  41093270 aacaatggtatgcatcaa 41093253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 41701265 - 41701168
Alignment:
Q  195 ctatgagatggataaatatgagcatcaatactagcaactgacagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
    ||||||||||||| ||  ||||||||||||||||||||||||| |||||||| |  ||||| |  ||||||||||| |  ||||||||||||||||||    
T  41701265 ctatgagatggatgaacttgagcatcaatactagcaactgacaatctattttactatatgtccgatctcattgcaataggaacaatggtatgcatcaa 41701168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 38245838 - 38245932
Alignment:
Q  209 aatatgagcatcaatactagcaactgacagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaaccttaaagaat 303  Q
    ||||||| | ||||||||||||| || |||||||||||||| ||||| | |||||||| |||||  ||||||||||||||| || |||| |||||    
T  38245838 aatatgaacgtcaatactagcaattggcagtctattttgcaatatgtccggtctcattacaacaggaacaatggtatgcatgaaacttatagaat 38245932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 45516590 - 45516699
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| | |||||| ||||||||||||||||  ||||| ||||||||||||||||||||||| ||||||||| |||    
T  45516590 acatgaaaatgatttaaatcatctttgatgaagttgactgcaagaagggaatctgaatagcacgccaattcctcacaattgaagctgatcgccaacctta 45516689  T
Q  120 aaccttgata 129  Q
    | ||||||||    
T  45516690 acccttgata 45516699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 44093891 - 44093782
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| |||||||| |||||||| || ||||  ||||| |||||||||| |||||| ||||| | ||||||| |||    
T  44093891 acatgaaaatgatttaaatcatctttgatgaggttgactgcaagaagtgagtctgaatagcacgccaattcctaacaatttaagctgaccgccaacctta 44093792  T
Q  120 aaccttgata 129  Q
    | ||||||||    
T  44093791 acccttgata 44093782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 292
Target Start/End: Complemental strand, 33631529 - 33631372
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  33631529 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 33631430  T
Q  235 acagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
     || ||||||||||| ||| ||||||||||||| ||||  ||||||||||||||||||    
T  33631429 gcattctattttgcaatatattcagtctcattgtaacagtaacaatggtatgcatcaa 33631372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 292
Target Start/End: Complemental strand, 18261449 - 18261292
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| |  |  |||||||||||| |||||||   ||||||||||| | ||    
T  18261449 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaatgtgttatgagatggatgaatatgacggtcaatactagcgattg 18261350  T
Q  235 acagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
     || ||||||||||| ||| ||||||||||||| ||||  ||||||||||||||||||    
T  18261349 gcattctattttgcaatatattcagtctcattgtaacagtaacaatggtatgcatcaa 18261292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 292
Target Start/End: Complemental strand, 33623425 - 33623268
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   | ||||||||||| ||    
T  33623425 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggttaatactagcaattg 33623326  T
Q  235 acagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
     || ||||||||||| ||| ||||||||||||| ||||  |||||||||||| |||||    
T  33623325 gcattctattttgcaatatattcagtctcattgtaacagtaacaatggtatgtatcaa 33623268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 16768109 - 16768179
Alignment:
Q  59 gcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 129  Q
    ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| ||||||||    
T  16768109 gcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaacccttgata 16768179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 292
Target Start/End: Complemental strand, 3423360 - 3423203
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||| | |||||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  3423360 atgaaactcattctcacctctttttttcttgtgattatgttgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 3423261  T
Q  235 acagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
     || ||||||||||| ||| ||||||||||||| ||||  |||||||||||| |||||    
T  3423260 gcattctattttgcaatatattcagtctcattgtaacagtaacaatggtatgtatcaa 3423203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 292
Target Start/End: Original strand, 22163917 - 22164074
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  22163917 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 22164016  T
Q  235 acagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
     || ||||||||||| ||| ||||||||||||| ||||  ||||||||||||||||||    
T  22164017 gcattctattttgcaatatattcagtctcattgtaacagtaacaatggtatgcatcaa 22164074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 49147877 - 49147986
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    ||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| |||||| |||||||||| ||||| ||||||||| |||    
T  49147877 acatggaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaatacctcacaatttaagctgatcgccaacctta 49147976  T
Q  120 aaccttgata 129  Q
    | ||||||||    
T  49147977 acccttgata 49147986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 30273126 - 30273030
Alignment:
Q  196 tatgagatggataaatatgagcatcaatactagcaactgacagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
    |||||||||||| |||||||   ||||||||||||| || || ||||||||||| ||| ||||||||||||| ||||  ||||||||||||||||||    
T  30273126 tatgagatggatgaatatgacggtcaatactagcaattggcattctattttgcaatatattcagtctcattgtaacagtaacaatggtatgcatcaa 30273030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 35297077 - 35296964
Alignment:
Q  16 atagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaac 115  Q
    |||||||||||| ||||||||||| || ||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | |||||||    
T  35297077 atagacatgaaaatgatttaaatcatcattgatcaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaac 35296978  T
Q  116 tttaaaccttgata 129  Q
     |||| ||||||||    
T  35296977 cttaacccttgata 35296964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 14688600 - 14688491
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| |||||||  ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||    
T  14688600 acatgaaaatgatttaaatcatctttgatgaggttgattgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaacctta 14688501  T
Q  120 aaccttgata 129  Q
    | | ||||||    
T  14688500 acctttgata 14688491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 465782 - 465709
Alignment:
Q  219 tcaatactagcaactgacagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
    ||||||||||||| || || ||||||||||| ||| ||||||||||||| ||||  ||||||||||||||||||    
T  465782 tcaatactagcaattggcattctattttgcaatatattcagtctcattgtaacagtaacaatggtatgcatcaa 465709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 45296475 - 45296392
Alignment:
Q  209 aatatgagcatcaatactagcaactgacagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
    |||||||  ||||||||||| || ||  ||||||||||| | |||||| ||| ||||||||||| ||||||||  |||||||||    
T  45296475 aatatgaaaatcaatactagtaattggtagtctattttgtagtatgtttagtgtcattgcaacagaaacaatgaaatgcatcaa 45296392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 29259214 - 29259107
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||    
T  29259214 acatgaaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaacctta 29259115  T
Q  120 aaccttga 127  Q
    | ||||||    
T  29259114 acccttga 29259107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 13821374 - 13821265
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| | ||||||||||||||| ||| | ||||||||| |||    
T  13821374 acatgaaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgtcaattcctcacaatttaagttgatcgccaacctta 13821275  T
Q  120 aaccttgata 129  Q
    | | ||||||    
T  13821274 accattgata 13821265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 28574360 - 28574263
Alignment:
Q  195 ctatgagatggataaatatgagcatcaatactagcaactgacagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
    ||||||||||||| ||||||||  ||||||||||||| || || ||||||||||| ||||| ||||||||||| ||||  |||||||| |||||||||    
T  28574360 ctatgagatggatgaatatgagtgtcaatactagcaattggcaatctattttgcaatatgtccagtctcattgtaacagtaacaatggcatgcatcaa 28574263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 292
Target Start/End: Complemental strand, 28561312 - 28561155
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||||| || ||||| ||| | || || | ||||||||||||| ||||||||  ||||||  ||||| ||    
T  28561312 atgaaactcattctcacctttttttttcttgtgaatatgatgatgttgtttagaaaggtgctatgagatggatgaatatgagtgtcaatataagcaattg 28561213  T
Q  235 acagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
     || ||||||||||| ||| | ||||||||||| ||||  |||||||  |||||||||    
T  28561212 gcaatctattttgcaatatatccagtctcattgtaacagtaacaatgacatgcatcaa 28561155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 292
Target Start/End: Complemental strand, 28566810 - 28566653
Alignment:
Q  135 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 234  Q
    |||||| |||||||||  | |||||| ||| ||||| || ||||| ||| | || || | ||||||||||||| ||||||||  ||||||  ||||| ||    
T  28566810 atgaaactcattctcacctttttttttcttgtgaatatgatgatgttgtttagaaaggtgctatgagatggatgaatatgagtgtcaatataagcaattg 28566711  T
Q  235 acagtctattttgcattatgttcagtctcattgcaacaaaaacaatggtatgcatcaa 292  Q
     || ||||||||||| ||| | ||||||||||| ||||  |||||||  |||||||||    
T  28566710 gcaatctattttgcaatatatccagtctcattgtaacagtaacaatgacatgcatcaa 28566653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 14009 - 13900
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| | ||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||    
T  14009 acatgaaaataatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaacctta 13910  T
Q  120 aaccttgata 129  Q
    | ||||||||    
T  13909 acccttgata 13900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 16498397 - 16498506
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||||||||| |||||||| ||||| |  ||||||||||| ||||  ||||| ||||||||||||||||| ||| ||| ||||||| |||    
T  16498397 acatgaaaatgatttaaatcatctttgatgaggttcattgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttaaccgccaacctta 16498496  T
Q  120 aaccttgata 129  Q
    | ||||||||    
T  16498497 acccttgata 16498506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 35164401 - 35164294
Alignment:
Q  142 tcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactgacagtct 241  Q
    |||||||||| |||||||||||| ||||| |||||||| ||||||||||| | |||| |  ||||| ||||| ||| |||||| |||||| || ||||||    
T  35164401 tcattctcatctattttttacttgtgaatatgttgatgttgtgtggacaggtgctataaattggatgaatataagcgtcaatattagcaattggcagtct 35164302  T
Q  242 attttgca 249  Q
    ||| ||||    
T  35164301 attctgca 35164294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 28493685 - 28493627
Alignment:
Q  16 atagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctg 74  Q
    |||||||||||| ||||||||||| |||||||| ||||||||| ||||||| |||||||    
T  28493685 atagacatgaaaatgatttaaatcatctttgatgaggttgacaacaagaagagaatctg 28493627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 29806094 - 29806036
Alignment:
Q  16 atagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctg 74  Q
    |||||||||||| ||||||||||| |||||||| ||||||||| ||||||| |||||||    
T  29806094 atagacatgaaaatgatttaaatcatctttgatgaggttgacaacaagaagagaatctg 29806036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 31932179 - 31932288
Alignment:
Q  20 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 119  Q
    |||||||| ||||| ||||| || ||||| || |||||||  ||||||||||| |  |||||| ||||||| ||| ||||||| ||||| |||| |||||    
T  31932179 acatgaaagtgattcaaatcctccttgatgagtttgacagtgagaagggaatccgaatagcaaaccaattcgtcaaaattgaaactaatagccagcttta 31932278  T
Q  120 aaccttgata 129  Q
     || ||||||    
T  31932279 gactttgata 31932288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University