View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_high_21 (Length: 307)
Name: NF17777_high_21
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 42340210 - 42340485
Alignment:
| Q |
18 |
atgatctcgtgtactctgatccagaggattttgtccctgagcctgagggttttttgcctaaagtgaaaaaccctgaggtcagagcatgggcaattaaagt |
117 |
Q |
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| T |
42340210 |
atgatctcgtgtactctgatccagaggattttgtccctgagcctgatggttttttgcctaaagtgaaaaaccctgaggtcagagcatgggcaattaaggt |
42340309 |
T |
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| Q |
118 |
tcattctctttggaaaaatttgagtaggaaagtatccagtgaggtcaagactcatcctaactaccatactctgcttcctgttcctggttctgttgttatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42340310 |
tcattctctttggaaaaatttgagtaggaaagtatccagtgaggtcaagactcatcctaactaccatactctgcttcctgttcctggttctgttgttatt |
42340409 |
T |
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| Q |
218 |
cctggctcgcgatttcgtgaagtttattactgggattcctactgggtaattaggtttgtttcttccttttttactc |
293 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42340410 |
cctggctctcgatttcgtgaagtttattactgggattcctactgggtaattaggtttgtttcttccttttttactc |
42340485 |
T |
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