View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17777_high_26 (Length: 250)
Name: NF17777_high_26
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_high_26 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 21111730 - 21111486
Alignment:
| Q |
6 |
agtagcataggacggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatg |
105 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21111730 |
agtatcattggacggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatg |
21111631 |
T |
|
| Q |
106 |
gatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctaca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21111630 |
gatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctaca |
21111531 |
T |
|
| Q |
206 |
tgaagaatgtctcgaatggatattgcattgtgatataaagcctca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21111530 |
tgaagaatgtctcgaatggatattgcattgtgatataaagcctca |
21111486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 18658843 - 18658608
Alignment:
| Q |
15 |
ggacggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttag |
114 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18658843 |
ggacggcttaaccacatgaacttgattgatatgtggggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatggatctttag |
18658744 |
T |
|
| Q |
115 |
ctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
18658743 |
ctgaaaatctttcatctaaaactaacacacttgactggagtaaaaggtatgatattgctttaggaacagctaaagttctagcttatctacatgaagaatg |
18658644 |
T |
|
| Q |
215 |
tctcgaatggatattgcattgtgatataaagcctca |
250 |
Q |
| |
|
| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
18658643 |
tttggaatggattttgcattgtgatataaagcctca |
18658608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 21130676 - 21130446
Alignment:
| Q |
20 |
gcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctgaa |
119 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
21130676 |
gcttaaccacatgaatttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatggaaaatggttctttagcggaa |
21130577 |
T |
|
| Q |
120 |
aatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctcg |
219 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| | | |
|
|
| T |
21130576 |
aatctttcatccaaaaccaacacacttgattggactaaaaggtatgatattgctttaggaacagctagagttttagcatatctacatgaagaatgtttgg |
21130477 |
T |
|
| Q |
220 |
aatggatattgcattgtgatataaagcctca |
250 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
21130476 |
aatggattttgcattgtgatataaagcctca |
21130446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 21123499 - 21123318
Alignment:
| Q |
69 |
aagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgata |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21123499 |
aagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgata |
21123400 |
T |
|
| Q |
169 |
ttgctttaggaacagctagagttcttgcttatctacatgaagaatgtctcgaatggatattgcattgtgatataaagcctca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||| |
|
|
| T |
21123399 |
ttgctttaggaacagctagagttcttgcttatctacatgaagaatgtatggagtggattttgcattgtgatataaagcctca |
21123318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 21098535 - 21098757
Alignment:
| Q |
19 |
ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga |
118 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||||||||| ||||| || || ||||| | ||||| || ||||||||||||||||| |||||||| || |
|
|
| T |
21098535 |
ggcttaatcacatgaatttgatcgaaatgtggggatattgcgctgagggaaaatatagactattggtttacgagtacatggaaaatggttctttagccga |
21098634 |
T |
|
| Q |
119 |
aaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctc |
218 |
Q |
| |
|
||| | || |||| ||| ||||||||||||||||||||| | ||||||||| || || |||||| | || |||||||||||||||||| | |
|
|
| T |
21098635 |
aaacttatcggctaa---taa---acttgattggagtaaaaggtacaaaattgctttatcaataggaagagttttagcatatctacatgaagaatgtttg |
21098728 |
T |
|
| Q |
219 |
gaatggatattgcattgtgatataaagcc |
247 |
Q |
| |
|
|||||||| || ||||||||||||||||| |
|
|
| T |
21098729 |
gaatggattttacattgtgatataaagcc |
21098757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 21108154 - 21108376
Alignment:
| Q |
19 |
ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga |
118 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||||||||| ||||| || || ||||| | ||||| || ||||||||||||||||| |||||||| || |
|
|
| T |
21108154 |
ggcttaatcacatgaatttgatcgaaatgtggggatattgcgctgagggaaaatatagactattggtttacgagtacatggaaaatggttctttagccga |
21108253 |
T |
|
| Q |
119 |
aaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctc |
218 |
Q |
| |
|
||| | || |||| ||| ||||||||||||||||||||| | |||| |||| || ||| |||||| | || |||||||||||||||||| | |
|
|
| T |
21108254 |
aaacttatcggctaa---taa---acttgattggagtaaaaggtacaaaattgttttatcaatagcaagagttttagcatatctacatgaagaatgtttg |
21108347 |
T |
|
| Q |
219 |
gaatggatattgcattgtgatataaagcc |
247 |
Q |
| |
|
|| ||||| |||||||||||||||||||| |
|
|
| T |
21108348 |
gagtggattttgcattgtgatataaagcc |
21108376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 29213244 - 29213149
Alignment:
| Q |
20 |
gcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagc |
115 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||| |||||||| || || | |||||||| || || ||||||| |||| | ||||| |||||||| |
|
|
| T |
29213244 |
gcttaaccacatgaatttgattgaattgtggggttattgtgcagagggaatacatagaatgtttgtctatgagttcatgtataatggttctttagc |
29213149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 39132067 - 39132290
Alignment:
| Q |
27 |
cacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatcttt |
126 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
39132067 |
cacatgaacttaattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatcttt |
39132166 |
T |
|
| Q |
127 |
catctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctcgaatggat |
226 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | || ||||| |
|
|
| T |
39132167 |
catctaaaactaacatgcttgattggagtaaaaggtatgatattgctttaggaacagctagagtcctagcttatctacatgaagaatgtttggagtggat |
39132266 |
T |
|
| Q |
227 |
attgcattgtgatataaagcctca |
250 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
39132267 |
tttacattgtgatataaagcctca |
39132290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 26744319 - 26744097
Alignment:
| Q |
19 |
ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga |
118 |
Q |
| |
|
||||||||||||||||||| || | |||||||| ||||||||||| || || |||||| | ||||| || |||| ||||||||| || ||||||| || |
|
|
| T |
26744319 |
ggcttaaccacatgaacttaattggtatgtggggctattgtgctgagggaaaacatagattgttggtttacgagtgcatggaaaacggtactttagccga |
26744220 |
T |
|
| Q |
119 |
aaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctc |
218 |
Q |
| |
|
||||||||||| || ||| |||||||||||||||||||||| | |||||| | ||||| || | | ||||||||| |||| ||||||||| | |
|
|
| T |
26744219 |
taatctttcatcaaa---taa---acttgattggagtaaaaggtataacattgctatgggaactgcaaagggccttgcttatttacacgaagaatgtttg |
26744126 |
T |
|
| Q |
219 |
gaatggatattgcattgtgatataaagcc |
247 |
Q |
| |
|
|| ||||| |||||||||||||||||||| |
|
|
| T |
26744125 |
gagtggattttgcattgtgatataaagcc |
26744097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 26698920 - 26698698
Alignment:
| Q |
19 |
ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga |
118 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||| |||||||| || || || || ||| | ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26698920 |
ggcttaatcacatgaatttgataggaatgtggggttattgtgccgagggaaaacacagattgttggtttatgagtacatggaaaatggtactttagctga |
26698821 |
T |
|
| Q |
119 |
aaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctc |
218 |
Q |
| |
|
||||| ||||| || | | |||||||||| ||||||||||| | |||||| | ||||| || | | |||||||||| |||| ||||| ||| | |
|
|
| T |
26698820 |
taatctctcatc---aagtga---acttgattggggtaaaaggtataacattgctatgggaactgcaaagggtcttgcttatttacacgaagagtgtttg |
26698727 |
T |
|
| Q |
219 |
gaatggatattgcattgtgatataaagcc |
247 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| |
|
|
| T |
26698726 |
gagtggattttgcattgcgatataaagcc |
26698698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 26714072 - 26713850
Alignment:
| Q |
19 |
ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga |
118 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||| ||||||||||| || || |||| | | ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26714072 |
ggcttaaccacatgaatttgattggaatgtggggttattgtgctgagggaaaacataaattgttggtttatgagtacatggaaaatggtactttagctga |
26713973 |
T |
|
| Q |
119 |
aaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctc |
218 |
Q |
| |
|
||||| | ||| ||| | |||||||||| | || || |||| ||||||| ||||||| || | | |||||||||| |||||||||| ||| | |
|
|
| T |
26713972 |
taatctcttatc--aaatga----acttgattggggaaagagatatggtattgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttg |
26713879 |
T |
|
| Q |
219 |
gaatggatattgcattgtgatataaagcc |
247 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| |
|
|
| T |
26713878 |
gagtggattttgcattgcgatataaagcc |
26713850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 26734083 - 26733861
Alignment:
| Q |
19 |
ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga |
118 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||| |||||||| || || || || ||| | ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26734083 |
ggcttaatcacatgaatttgataggaatgtggggttattgtgccgagggaaaacacagattgttggtttatgagtacatggaaaatggtactttagctga |
26733984 |
T |
|
| Q |
119 |
aaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctc |
218 |
Q |
| |
|
||||| ||||| || | | |||||||||| ||||||||||| | |||||| | ||||| || | | |||||||||| |||| ||||| ||| | |
|
|
| T |
26733983 |
taatctctcatc---aagtga---acttgattggggtaaaaggtataacattgctatgggaactgcaaagggtcttgcttatttacacgaagagtgtttg |
26733890 |
T |
|
| Q |
219 |
gaatggatattgcattgtgatataaagcc |
247 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| |
|
|
| T |
26733889 |
gagtggattttgcattgcgatataaagcc |
26733861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 26737308 - 26737086
Alignment:
| Q |
19 |
ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga |
118 |
Q |
| |
|
|||||||||||||||| || || | ||||||||| ||||||||||| || || |||| | | ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26737308 |
ggcttaaccacatgaatttaattggaatgtggggttattgtgctgagggaaaacataaattgttggtttatgagtacatggaaaatggtactttagctga |
26737209 |
T |
|
| Q |
119 |
aaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctc |
218 |
Q |
| |
|
||||| ||||| ||| | |||||||||| | || || |||| ||||||| ||||||| || | | |||||||||| |||||||||| ||| | |
|
|
| T |
26737208 |
taatctctcatc--aaatga----acttgattggggaaagagatatggtattgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttg |
26737115 |
T |
|
| Q |
219 |
gaatggatattgcattgtgatataaagcc |
247 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| |
|
|
| T |
26737114 |
gagtggattttgcattgcgatataaagcc |
26737086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 26751244 - 26751133
Alignment:
| Q |
19 |
ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga |
118 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||| ||||||||||| || ||||||||| | ||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
26751244 |
ggcttaaccacatgaatttgattggtatgtggggttattgtgctgagggaaagcatagattgttggtttatgagtacatggaaaagggtactttagctga |
26751145 |
T |
|
| Q |
119 |
aaatctttcatc |
130 |
Q |
| |
|
||||| ||||| |
|
|
| T |
26751144 |
taatctctcatc |
26751133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 26675591 - 26675483
Alignment:
| Q |
142 |
cacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctcgaatggatattgcattgtgatat |
241 |
Q |
| |
|
||||||||||| |||| |||||| | |||||| ||||||| || | | |||||| ||| |||||||||||||| | || ||||| |||||||||||||| |
|
|
| T |
26675591 |
cacttgattggggtaagaggtataacattgctctaggaaccgcaaaggctcttgcatatttacatgaagaatgtttggagtggattttgcattgtgatat |
26675492 |
T |
|
| Q |
242 |
aaagcctca |
250 |
Q |
| |
|
||||||||| |
|
|
| T |
26675491 |
aaagcctca |
26675483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 47212482 - 47212387
Alignment:
| Q |
20 |
gcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagc |
115 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||| || || || |||||||| | || ||||||| |||||| ||||| |||||||| |
|
|
| T |
47212482 |
gcttaaccacatgaatttgattgaaatgtggggttattgtgcagagggaaaacatagaatgcttgtgtatgagttcatggataatggttctttagc |
47212387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 47193415 - 47193515
Alignment:
| Q |
24 |
aaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatc |
123 |
Q |
| |
|
||||| ||||| || || || |||||||||||||||| |||||| || ||||| ||||||| |||||||| || ||| |||| |||||||| || |||| |
|
|
| T |
47193415 |
aaccatatgaatttaattgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatc |
47193514 |
T |
|
| Q |
124 |
t |
124 |
Q |
| |
|
| |
|
|
| T |
47193515 |
t |
47193515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 9792536 - 9792615
Alignment:
| Q |
45 |
atgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatct |
124 |
Q |
| |
|
|||||||||||||||| |||||| || ||||| ||||||| |||||||| |||||| |||| || |||| ||| ||||| |
|
|
| T |
9792536 |
atgtggggatattgtgttgaagggaaaaatagacttttggtttatgagtatatggaacatggttcattagttgagaatct |
9792615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 26690373 - 26690595
Alignment:
| Q |
19 |
ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga |
118 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||| |||||||| || || || || ||| | || || | ||||||||||||||| || |||||||| || |
|
|
| T |
26690373 |
ggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgttagtttttgagtacatggaaaaaggttctttagcgga |
26690472 |
T |
|
| Q |
119 |
aaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagt-tcttgcttatctacatgaagaatgtct |
217 |
Q |
| |
|
||| | |||| | || ||||| ||||| |||| |||||| | |||||| | ||||| || | ||| |||||| ||| |||||||||||||| | |
|
|
| T |
26690473 |
taatttgtcat------caaatgcacttaattggggtaagaggtataaaattgctctcggaactgc-aaagtgtcttgcatatttacatgaagaatgttt |
26690565 |
T |
|
| Q |
218 |
cgaatggatattgcattgtgatataaagcc |
247 |
Q |
| |
|
|| ||||| ||||||||||| |||||||| |
|
|
| T |
26690566 |
ggagtggattttgcattgtgacataaagcc |
26690595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 26731684 - 26731906
Alignment:
| Q |
19 |
ggcttaaccacatgaacttgatagaaatgtggggatattgtgctgaaggtaagcatagaattttggtatatgagtacatggaaaatggatctttagctga |
118 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||| |||||||| || || || || ||| | || || | ||||||||||||||| || |||||||| || |
|
|
| T |
26731684 |
ggcttaaccacatgaatttgattggtatgtgggggtattgtgcagagggaaaacacagattgttagtttttgagtacatggaaaaaggttctttagcgga |
26731783 |
T |
|
| Q |
119 |
aaatctttcatctaaaactaacacacttgattggagtaaaaggtatgatattgctttaggaacagctagagt-tcttgcttatctacatgaagaatgtct |
217 |
Q |
| |
|
||| | |||| | || ||||| ||||| |||| |||||| | |||||| | ||||| || | ||| |||||| ||| |||||||||||||| | |
|
|
| T |
26731784 |
taatttgtcat------caaatgcacttaattggggtaagaggtataaaattgctctcggaactgc-aaagtgtcttgcatatttacatgaagaatgttt |
26731876 |
T |
|
| Q |
218 |
cgaatggatattgcattgtgatataaagcc |
247 |
Q |
| |
|
|| ||||| ||||||||||| |||||||| |
|
|
| T |
26731877 |
ggagtggattttgcattgtgacataaagcc |
26731906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 26694700 - 26694756
Alignment:
| Q |
191 |
tcttgcttatctacatgaagaatgtctcgaatggatattgcattgtgatataaagcc |
247 |
Q |
| |
|
|||||| ||| |||||||||||||| | || ||||| ||||||||||| |||||||| |
|
|
| T |
26694700 |
tcttgcctatttacatgaagaatgtttggagtggattttgcattgtgacataaagcc |
26694756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University