View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_high_28 (Length: 244)
Name: NF17777_high_28
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 3056373 - 3056158
Alignment:
| Q |
13 |
ttcactgccacgcgagttttgcaagttgtgttgttgttgatgactccttcgtaaactattccaaaagctccccttcctagctctttgtcaaatccattgg |
112 |
Q |
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| T |
3056373 |
ttcactgccacgcgagttttgcaagttgtgttgttgttgatgactccttcgtaaactattccaaaagctccccttcctagctctttgtcaaatccattgg |
3056274 |
T |
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| Q |
113 |
tagcttcttcaagctcttcataagtgaagcaacgcaaattggtttcaacagaagtgtcacttttgctaactcttctaagcttcttcttgtactgaaaaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056273 |
tagcttcttcaagctcttcataagtgaagcaacgcaaattggtttcaacagaagtgtcacttttgctaactcttctaagcttcttcttgtactgaaaaat |
3056174 |
T |
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| Q |
213 |
gaaggaggtacaaaca |
228 |
Q |
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|||||||||||||||| |
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| T |
3056173 |
gaaggaggtacaaaca |
3056158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 3070547 - 3070751
Alignment:
| Q |
15 |
cactgccacgcgagttttgcaagttgtgttgttgttgatgactccttcgtaaactattccaaaagctccccttcctagctctttgtcaaatccattggta |
114 |
Q |
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||||||||| ||||||||| || ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3070547 |
cactgccacccgagttttggaatctgtgtcgttgttgatgactccttcgtaaacaataccaaaagctccccttcctagctctttgtcaaatccattggta |
3070646 |
T |
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| Q |
115 |
gcttcttcaagctcttcataagtgaagcaacgcaaattgg------tttcaacagaagtgtcacttttgctaactcttctaagcttcttcttgtactgaa |
208 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||| |||| |||||||||||||||| ||||||| ||||| |
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| T |
3070647 |
gcttcttcaagctcttcataagtgaagcaacacaaattggatttaatttcaacacacgtgtcacctttgataactcttctaagctttttcttgtgctgaa |
3070746 |
T |
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| Q |
209 |
aaatg |
213 |
Q |
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||||| |
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| T |
3070747 |
aaatg |
3070751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 3035502 - 3035291
Alignment:
| Q |
16 |
actgccacgcgagttttgcaagttgtgttgttgttgatgactccttcgtaaactattccaaaagctccccttcctagctctttgtcaaatccattggtag |
115 |
Q |
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|||||||| |||| |||| ||| ||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
3035502 |
actgccacacgagctttggaagcggtgttgttgttgacgactccttcataaacaataccaaaagctccccttcctagctctttgtcgaatccattagtag |
3035403 |
T |
|
| Q |
116 |
cttcttcaagctcttcataagtgaagcaacgcaaattgg------tttcaacagaagtgtcacttttgctaactcttctaagcttcttcttgtactgaaa |
209 |
Q |
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|||||||||||||| ||||||||||||||||||||| || |||||| | || |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3035402 |
cttcttcaagctctgcataagtgaagcaacgcaaatgggattcaatttcaaaactagcgtcacttttgctaactcttctaagcttcttcttgtacttaaa |
3035303 |
T |
|
| Q |
210 |
aatgaaggaggt |
221 |
Q |
| |
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||||| |||||| |
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| T |
3035302 |
aatgagggaggt |
3035291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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