View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_high_29 (Length: 243)
Name: NF17777_high_29
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 48106300 - 48106525
Alignment:
| Q |
1 |
cattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgtatctgagatagtgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48106300 |
cattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgcatctgagatagtgt |
48106399 |
T |
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| Q |
101 |
agttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattcctggtagtcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48106400 |
agttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattcctggtagtcaat |
48106499 |
T |
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| Q |
201 |
gtttgtgagtatatgatggttcatcc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
48106500 |
gtttgtgagtatatgatggttcatcc |
48106525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 48062665 - 48062889
Alignment:
| Q |
1 |
cattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgtatctgagatagtgt |
100 |
Q |
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|||||||||||| | ||||| |||||| ||||||||||||||||||||||| || ||||| || |||||||||| | ||| | ||||| |||||| | |
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| T |
48062665 |
cattcaggttgacgtctttcactgtcccacaaaatgttatgacctctgacagatatgccattttccttagcaaatttcagcatggcatctgggatagtat |
48062764 |
T |
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| Q |
101 |
agttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattcctggtagtcaat |
200 |
Q |
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| T |
48062765 |
agttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaaccatttctggtagtcact |
48062864 |
T |
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| Q |
201 |
gtttgtgagtatatgatggttcatc |
225 |
Q |
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||||||||| |||||| |||||||| |
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| T |
48062865 |
gtttgtgaggatatgacggttcatc |
48062889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 48066770 - 48066979
Alignment:
| Q |
17 |
tttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgtatctgagatagtgtagttttcttggcctgg |
116 |
Q |
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||||||||||||| |||||| |||||||||||||||||| ||||| ||||| ||||||| | ||| | ||| | ||||| |||||||| |||||| | |
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| T |
48066770 |
tttcatcgtcccacaaaatggcatgacctctgacagaaatgccattttctttggcaaatttcagcatggcatcaggaatagtatagttttcctggccttg |
48066869 |
T |
|
| Q |
117 |
aattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattcctggtagtcaatgtttgtgagtatatga |
216 |
Q |
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|||| | |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| || ||| |
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| T |
48066870 |
aattttctctgtactataccacttcatctcattagtgaaagttgtgtacttgaatcttgacacaaaccatttctggtactcaatgtttgtgaggatgtga |
48066969 |
T |
|
| Q |
217 |
tggttcatcc |
226 |
Q |
| |
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| |||||||| |
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| T |
48066970 |
tagttcatcc |
48066979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 48099715 - 48099924
Alignment:
| Q |
17 |
tttcatcgtcccagaaaatgttatgacctctgacagaaattccattatctttagcaaattctaacattgtatctgagatagtgtagttttcttggcctgg |
116 |
Q |
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|||||||||||||||||| | ||||||||||||||||||| ||||| ||||| || |||| | ||| | ||||| |||||| |||||||| |||||| | |
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| T |
48099715 |
tttcatcgtcccagaaaacggtatgacctctgacagaaatgccattttctttggcgaatttcatcatggcatctgggatagtatagttttcctggccttg |
48099814 |
T |
|
| Q |
117 |
aattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaaccattcctggtagtcaatgtttgtgagtatatga |
216 |
Q |
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|| | | |||||||||||||| ||||| ||||| || |||| |||||| ||||||||||||||||||||| |||||| |||| |||||| || || | | |
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| T |
48099815 |
aaatctctctgtactataccacttcatctcattagtaaaagctgtgtacttgaatcttgacacaaaccatctctggtactcaaagtttgtaaggatgtaa |
48099914 |
T |
|
| Q |
217 |
tggttcatcc |
226 |
Q |
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|||||||||| |
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| T |
48099915 |
tggttcatcc |
48099924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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