View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_high_30 (Length: 243)
Name: NF17777_high_30
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 13447291 - 13447062
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13447291 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgagaattac |
13447192 |
T |
|
| Q |
101 |
tgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13447191 |
tgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtga |
13447092 |
T |
|
| Q |
201 |
ttcgcattcctgatagcttacctcttgatg |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
13447091 |
ttcgcattcctgatagcttacctcttgatg |
13447062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 13419740 - 13419511
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||||| |
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| T |
13419740 |
caaagtagaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattac |
13419641 |
T |
|
| Q |
101 |
tgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtga |
200 |
Q |
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||| | | || ||| |||| || |||| |||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13419640 |
tgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtga |
13419541 |
T |
|
| Q |
201 |
ttcgcattcctgatagcttacctcttgatg |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
13419540 |
ttcgcattcctgatagcttacctcttgatg |
13419511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 13426631 - 13426402
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||| ||||||||||| |
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| T |
13426631 |
caaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtcgttcatgcgaaaattgtgcggaagatcttgagaattac |
13426532 |
T |
|
| Q |
101 |
tgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtga |
200 |
Q |
| |
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||| || || | || |||| || ||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
13426531 |
tgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggaggttattccgactcaatggttgcagatgagcactttgtga |
13426432 |
T |
|
| Q |
201 |
ttcgcattcctgatagcttacctcttgatg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
13426431 |
ttcgcattcctgatagcttacctcttgatg |
13426402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 13413385 - 13413168
Alignment:
| Q |
11 |
aagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||| || ||||||||||||| || || || ||||| ||| || |||||||||||||| |||||| |
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| T |
13413385 |
aagtttaaagttggagacaaagtaggtgttggctacttgattgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaat |
13413286 |
T |
|
| Q |
111 |
atactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc |
210 |
Q |
| |
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| |||| || |||| ||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13413285 |
ttgtagtcacatgtggtgccaagtatcgtgatggaaccgtcacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcc |
13413186 |
T |
|
| Q |
211 |
tgatagcttacctcttga |
228 |
Q |
| |
|
||| | | |||||||||| |
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| T |
13413185 |
tgacaacatacctcttga |
13413168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13389007 - 13389234
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||| || || |||||||||||||||||||| || ||| ||||||||| ||| || |||| |||||| |
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| T |
13389007 |
caaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgttgacaatcttgaaaattac |
13389106 |
T |
|
| Q |
101 |
tgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtga |
200 |
Q |
| |
|
|| ||| || |||| |||| || |||| ||| ||||| || | ||| |||||||||| || |||||| |||||||||| ||| |||| ||| |
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| T |
13389107 |
tgtcccacatttactttcacatgtggtgccaagtatcgcgatggaacgagcacatatggaggttattctgactcattggttgcagatgagaacttcgtgg |
13389206 |
T |
|
| Q |
201 |
ttcgcattcctgatagcttacctcttga |
228 |
Q |
| |
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||| |||||||||| | ||||| ||||| |
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| T |
13389207 |
ttcacattcctgatggattaccacttga |
13389234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 13385186 - 13385288
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||| || || ||||| ||||||||||||| || ||| ||||||||| ||| || |||| |||||| |
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| T |
13385186 |
caaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgttgacaatcttgaaaattac |
13385285 |
T |
|
| Q |
101 |
tgc |
103 |
Q |
| |
|
||| |
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|
| T |
13385286 |
tgc |
13385288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 13454089 - 13454015
Alignment:
| Q |
156 |
atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg |
230 |
Q |
| |
|
||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| ||| ||||||||||||| |
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| T |
13454089 |
atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatg |
13454015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 13454244 - 13454143
Alignment:
| Q |
1 |
caaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattac |
100 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||| ||||||| | |||||||||| |||| || ||| ||||||||| || || ||||||||||| |
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| T |
13454244 |
caaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgttgataatcttgagaattac |
13454145 |
T |
|
| Q |
101 |
tg |
102 |
Q |
| |
|
|| |
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|
| T |
13454144 |
tg |
13454143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 13393562 - 13393641
Alignment:
| Q |
149 |
atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga |
228 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||||||||| ||||||||| | ||| |||||||||| ||||||| ||||| |
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| T |
13393562 |
atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttaccacttga |
13393641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
| Q |
136 |
tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc |
210 |
Q |
| |
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|||||||||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
47601427 |
tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
47601353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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