View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17777_high_38 (Length: 204)

Name: NF17777_high_38
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17777_high_38
NF17777_high_38
[»] scaffold0068 (2 HSPs)
scaffold0068 (92-189)||(42097-42194)
scaffold0068 (41-69)||(42001-42029)
[»] chr1 (17 HSPs)
chr1 (92-189)||(13542269-13542366)
chr1 (88-189)||(19139836-19139937)
chr1 (88-189)||(13505047-13505148)
chr1 (88-189)||(13649097-13649198)
chr1 (88-158)||(16469399-16469469)
chr1 (88-189)||(13419929-13420030)
chr1 (93-189)||(15900186-15900282)
chr1 (92-158)||(13669655-13669721)
chr1 (92-158)||(13683748-13683814)
chr1 (88-133)||(13609673-13609718)
chr1 (92-189)||(20476586-20476683)
chr1 (47-87)||(16497406-16497446)
chr1 (41-71)||(15900092-15900122)
chr1 (41-87)||(16469310-16469356)
chr1 (88-130)||(16497492-16497534)
chr1 (93-158)||(20367545-20367610)
chr1 (41-69)||(13542434-13542462)
[»] chr6 (3 HSPs)
chr6 (88-189)||(22285089-22285190)
chr6 (92-189)||(21813317-21813414)
chr6 (41-74)||(22285000-22285033)
[»] scaffold0006 (2 HSPs)
scaffold0006 (88-189)||(138278-138379)
scaffold0006 (92-158)||(167269-167335)
[»] chr2 (2 HSPs)
chr2 (92-189)||(38058685-38058782)
chr2 (41-69)||(38058589-38058617)
[»] scaffold0069 (1 HSPs)
scaffold0069 (93-189)||(25520-25616)
[»] scaffold0406 (1 HSPs)
scaffold0406 (92-189)||(9148-9245)
[»] scaffold0012 (2 HSPs)
scaffold0012 (92-189)||(114832-114929)
scaffold0012 (92-133)||(107183-107224)
[»] chr8 (1 HSPs)
chr8 (92-189)||(20815711-20815808)


Alignment Details
Target: scaffold0068 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 42097 - 42194
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaattgt 189  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||| ||| ||||||||| |||||||  ||||||| ||| ||||| |||||||||||    
T  42097 gaaattatcaagtgtctccaaatgttctaaagtcaaagagcgtaatagaagaaactcaattttttcatcagttatatcattatttgcacttgaattgt 42194  T

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Target: scaffold0068; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 42001 - 42029
Alignment:
Q  41 acatacctgagcattgaaaaatggtgtag 69  Q
    |||||||||||||||||||||||||||||    
T  42001 acatacctgagcattgaaaaatggtgtag 42029  T

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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 13542366 - 13542269
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaattgt 189  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||| ||| ||||||||| |||||||  ||||||| ||| ||||| |||||||||||    
T  13542366 gaaattatcaagtgtctccaaatgttctaaagtcaaagagcgtaatagaagaaactcaattttttcatcagttatatcattatttgcacttgaattgt 13542269  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 19139836 - 19139937
Alignment:
Q  88 agaagaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaatt 187  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| ||  || ||||||||| |||||||  ||||||| ||| ||||  | |||||||    
T  19139836 agaagaaattatcaagtgtctccaaatgttctaaagtcaaagaacgcaattgaagaaactcaattttttcatcagttatatcattattttcatttgaatt 19139935  T
Q  188 gt 189  Q
    ||    
T  19139936 gt 19139937  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 13505148 - 13505047
Alignment:
Q  88 agaagaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaatt 187  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| ||  || ||||||| | |||||||  ||| ||| ||| ||| | |||||||||    
T  13505148 agaagaaattatcaagtgtctccaaatgttctaaagtcaaagaacgcaattgaagaaactcgattttttcatcagtaatatcattattagcacttgaatt 13505049  T
Q  188 gt 189  Q
    ||    
T  13505048 gt 13505047  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 13649198 - 13649097
Alignment:
Q  88 agaagaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaatt 187  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| ||  || ||||||| | |||||||  ||| ||| ||| ||| | |||||||||    
T  13649198 agaagaaattatcaagtgtctccaaatgttctaaagtcaaagaacgcaattgaagaaactcgattttttcatcagtaatatcattattagcacttgaatt 13649099  T
Q  188 gt 189  Q
    ||    
T  13649098 gt 13649097  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 16469399 - 16469469
Alignment:
Q  88 agaagaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttca 158  Q
    |||||||||||||||| ||||||||||| |||||||||||||| || ||  || ||||||||| |||||||    
T  16469399 agaagaaattatcaagtgtctccaaatgttctaaagtcaaagatcgcaattgaagaaactcaattttttca 16469469  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 13420030 - 13419929
Alignment:
Q  88 agaagaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaatt 187  Q
    |||||||||||||||| || |||||||| ||||||||||||||||| ||  || ||||||| | |||||||  ||| ||| ||| ||| | |||||||||    
T  13420030 agaagaaattatcaagtgtttccaaatgttctaaagtcaaagaacgcaattgaagaaactcgattttttcatcagtaatatcattattagcacttgaatt 13419931  T
Q  188 gt 189  Q
    ||    
T  13419930 gt 13419929  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 15900186 - 15900282
Alignment:
Q  93 aaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaattgt 189  Q
    ||||||||||| |||| |||||| ||||||||||||||||| |  ||| ||||||||| |||||||   || ||| ||| ||||| |||||||||||    
T  15900186 aaattatcaagtgtctgcaaatgttctaaagtcaaagaacgcagtagaagaaactcaattttttcatcggtgatatcattatttgcacttgaattgt 15900282  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 13669721 - 13669655
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttca 158  Q
    |||||||||||| ||||||||||| |||||||||||| |||| ||  || ||||||||| |||||||    
T  13669721 gaaattatcaagtgtctccaaatgttctaaagtcaaaaaacgcaattgaagaaactcaattttttca 13669655  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 13683814 - 13683748
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttca 158  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||  || ||||||| | |||||||    
T  13683814 gaaattatcaagtgtctccaaatgttctaaagtcaaagaacgcaattgaagaaactcgattttttca 13683748  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 13609718 - 13609673
Alignment:
Q  88 agaagaaattatcaagagtctccaaatgctctaaagtcaaagaacg 133  Q
    |||||||||||||||| || |||||||| |||||||||||||||||    
T  13609718 agaagaaattatcaagtgtttccaaatgttctaaagtcaaagaacg 13609673  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 20476683 - 20476586
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaattgt 189  Q
    |||||||||||| |||| |||||| ||||||||||||||||| ||  || ||||||| | |||||||  ||| ||| ||| ||| | |||||||||||    
T  20476683 gaaattatcaagtgtcttcaaatgttctaaagtcaaagaacgcaattgaagaaactcgattttttcatcagtgatatcattattagcacttgaattgt 20476586  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 16497406 - 16497446
Alignment:
Q  47 ctgagcattgaaaaatggtgtagaaacagaaggctccaaac 87  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  16497406 ctgagcattgaaaaatggtgtagaaacataaggctcaaaac 16497446  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 15900092 - 15900122
Alignment:
Q  41 acatacctgagcattgaaaaatggtgtagaa 71  Q
    |||||||||||||||||||||||||||||||    
T  15900092 acatacctgagcattgaaaaatggtgtagaa 15900122  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 16469310 - 16469356
Alignment:
Q  41 acatacctgagcattgaaaaatggtgtagaaacagaaggctccaaac 87  Q
    |||||||||||||  ||||||||||||||||||| ||||||| ||||    
T  16469310 acatacctgagcaccgaaaaatggtgtagaaacataaggctctaaac 16469356  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 16497492 - 16497534
Alignment:
Q  88 agaagaaattatcaagagtctccaaatgctctaaagtcaaaga 130  Q
    |||||||||||||||| ||||||||||| |||||||| |||||    
T  16497492 agaagaaattatcaagtgtctccaaatgttctaaagttaaaga 16497534  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 20367610 - 20367545
Alignment:
Q  93 aaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttca 158  Q
    ||||||||||| |||| |||||| ||||||||||||||||| ||  || ||||||| | |||||||    
T  20367610 aaattatcaagtgtcttcaaatgttctaaagtcaaagaacgcaattgaagaaactcgattttttca 20367545  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 13542462 - 13542434
Alignment:
Q  41 acatacctgagcattgaaaaatggtgtag 69  Q
    |||||||||||||||||||||||||||||    
T  13542462 acatacctgagcattgaaaaatggtgtag 13542434  T

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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 22285089 - 22285190
Alignment:
Q  88 agaagaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaatt 187  Q
    ||||||||  |||||| ||||||||||| ||||||||||||||||| || ||| ||||||||| ||||||| |||||||| ||| ||||| || ||||||    
T  22285089 agaagaaagaatcaagtgtctccaaatgttctaaagtcaaagaacgcaatagaagaaactcaattttttcattagttatatcattatttgcacatgaatt 22285188  T
Q  188 gt 189  Q
    ||    
T  22285189 gt 22285190  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 21813414 - 21813317
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaattgt 189  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||  || ||||||| | |||||||  ||| ||| |||  |||| |||||||||||    
T  21813414 gaaattatcaagtgtctccaaatgttctaaagtcaaagaacgcaattgaagaaactcgattttttcatcagtgatatcattttttgcacttgaattgt 21813317  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 22285000 - 22285033
Alignment:
Q  41 acatacctgagcattgaaaaatggtgtagaaaca 74  Q
    ||||||||||||||||||||||||||||||||||    
T  22285000 acatacctgagcattgaaaaatggtgtagaaaca 22285033  T

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Target: scaffold0006 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 138379 - 138278
Alignment:
Q  88 agaagaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaatt 187  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| ||  || ||||||| | |||||||  ||| ||| ||| ||| | |||||||||    
T  138379 agaagaaattatcaagtgtctccaaatgttctaaagtcaaagaacgcaattgaagaaactcgattttttcatcagtgatatcattattagcacttgaatt 138280  T
Q  188 gt 189  Q
    ||    
T  138279 gt 138278  T

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Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 167335 - 167269
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttca 158  Q
    |||||||||||| ||||||||||| |||||||||||| |||| ||  || ||||||||| |||||||    
T  167335 gaaattatcaagtgtctccaaatgttctaaagtcaaaaaacgcaattgaagaaactcaattttttca 167269  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 38058685 - 38058782
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaattgt 189  Q
    |||||||||||| ||||||||||| |||||||| |||||||| || ||| ||||||||| |||||||  ||| ||| ||| ||||| |||||| ||||    
T  38058685 gaaattatcaagtgtctccaaatgttctaaagttaaagaacgcaatagaagaaactcaattttttcatcagtgatatcattatttgcacttgatttgt 38058782  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 38058589 - 38058617
Alignment:
Q  41 acatacctgagcattgaaaaatggtgtag 69  Q
    |||||||||||||||||||||||||||||    
T  38058589 acatacctgagcattgaaaaatggtgtag 38058617  T

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Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 25616 - 25520
Alignment:
Q  93 aaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaattgt 189  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||  || ||||||||| |||||||  ||| ||| ||| ||| | |||||||||||    
T  25616 aaattatcaagtgtctccaaatgttctaaagtcaaagaacgcaattgaagaaactcaattttttcatcagtgatatcattattagcacttgaattgt 25520  T

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Target: scaffold0406 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 9148 - 9245
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaattgt 189  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||  || ||||||| | |||||||  ||| ||| ||| ||| | |||||||||||    
T  9148 gaaattatcaagtgtctccaaatgttctaaagtcaaagaacgcaattgaagaaactcgattttttcatcagtgatatcattattagcacttgaattgt 9245  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 114929 - 114832
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaattgt 189  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||  || ||||||| | |||||||  ||| ||| ||| ||| | |||||||||||    
T  114929 gaaattatcaagtgtctccaaatgttctaaagtcaaagaacgcaattgaagaaactcgattttttcatcagtgatatcattattagcacttgaattgt 114832  T

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Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 107224 - 107183
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacg 133  Q
    |||||||||||| |||||||| || |||||||||||||||||    
T  107224 gaaattatcaagtgtctccaattgttctaaagtcaaagaacg 107183  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 20815711 - 20815808
Alignment:
Q  92 gaaattatcaagagtctccaaatgctctaaagtcaaagaacgtaaaagaggaaactcaactttttcactagttataccataatttggacttgaattgt 189  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||  || ||||||| | |||||||  ||| ||| ||| ||| | |||||||||||    
T  20815711 gaaattatcaagtgtctccaaatgttctaaagtcaaagaacgcaattgaagaaactcgattttttcatcagtgatatcattattagcacttgaattgt 20815808  T

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