View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_high_4 (Length: 483)
Name: NF17777_high_4
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 57 - 465
Target Start/End: Original strand, 43540008 - 43540416
Alignment:
| Q |
57 |
tacaaacaaaggtgcccatgaatacgtcattatatcaaatggatgttgaccgacaaatatgcattgtatcaaataccagaacttacctcctctactccat |
156 |
Q |
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| T |
43540008 |
tacaaacaaaggtgcccatgaatatgtcattatatcaaatggatgttgactgacaaatatgcatactatcaaataccagaacttacctcctctactccat |
43540107 |
T |
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| Q |
157 |
ctgtgtctgtaatgtctaaatatcctttgataagggagttgaaaactacaggatttggatgcactccaagctccttcattttgtatagaaatctcaaggc |
256 |
Q |
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| T |
43540108 |
ctgtgtctgtaatgtctaaatatcctttgataagggagttgaaaactacaggatttggatgcactccaagctccttcattttgtatagaaatctcaaggc |
43540207 |
T |
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| Q |
257 |
ttctgtcatgttaccttccttacaataaccgcgtattatgataccgcaggttcgttcattaggcttcactttgttattatactgctgcattttcaatatc |
356 |
Q |
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| T |
43540208 |
ttctgtcatgttaccttccttacaataaccgcgtattatgataccgcaggttcgttcattaggcttcactttgttattatactgctgcattttcaatatc |
43540307 |
T |
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| Q |
357 |
aacctttccgcattatctgtctcaccattctgagcaaacgccctcgccagtgtgttgtatgtgacaatgtccggctgcatgccagagttcaccattttat |
456 |
Q |
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| T |
43540308 |
aacctttccgcattatctgtctcaccattctgagcaaacgccctcgccagtgtgttgtatgtgacaatgtccggctgcatgccagagttcaccattttat |
43540407 |
T |
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| Q |
457 |
gcataacat |
465 |
Q |
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| T |
43540408 |
gcataacat |
43540416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43539943 - 43539988
Alignment:
| Q |
1 |
agcagcacagatttaggtagggacacttcaaacacataataccttc |
46 |
Q |
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| T |
43539943 |
agcaacacaaatttaggtagggacacatcaaacacataataccttc |
43539988 |
T |
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