View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17777_high_5 (Length: 475)

Name: NF17777_high_5
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17777_high_5
NF17777_high_5
[»] chr8 (20 HSPs)
chr8 (189-285)||(23220003-23220099)
chr8 (183-284)||(30971977-30972078)
chr8 (189-280)||(23220855-23220946)
chr8 (207-283)||(16106019-16106095)
chr8 (207-283)||(16113259-16113335)
chr8 (207-284)||(16101519-16101596)
chr8 (195-280)||(30971285-30971370)
chr8 (189-282)||(12836696-12836789)
chr8 (221-257)||(32744033-32744069)
chr8 (206-285)||(18573509-18573588)
chr8 (213-271)||(1637573-1637631)
chr8 (189-282)||(5152430-5152523)
chr8 (169-282)||(28965773-28965887)
chr8 (212-285)||(37731864-37731935)
chr8 (189-280)||(1636848-1636939)
chr8 (172-258)||(37730902-37730990)
chr8 (217-284)||(42757602-42757669)
chr8 (234-285)||(1274129-1274180)
chr8 (191-275)||(42758382-42758466)
chr8 (213-281)||(15869725-15869793)
[»] chr3 (20 HSPs)
chr3 (168-283)||(33147329-33147445)
chr3 (213-286)||(40929858-40929931)
chr3 (207-284)||(54285810-54285887)
chr3 (189-281)||(33148276-33148368)
chr3 (213-280)||(2841207-2841274)
chr3 (221-285)||(27359844-27359908)
chr3 (212-283)||(4300930-4301001)
chr3 (221-285)||(28422854-28422918)
chr3 (234-283)||(39645391-39645440)
chr3 (212-284)||(27473853-27473925)
chr3 (212-283)||(2840201-2840271)
chr3 (212-285)||(27317475-27317548)
chr3 (189-282)||(8652108-8652200)
chr3 (212-285)||(27474880-27474953)
chr3 (207-278)||(17619139-17619210)
chr3 (217-285)||(39644535-39644603)
chr3 (213-280)||(14460134-14460201)
chr3 (232-283)||(29032824-29032875)
chr3 (222-280)||(51341874-51341932)
chr3 (168-285)||(24858284-24858402)
[»] chr7 (12 HSPs)
chr7 (207-285)||(5995248-5995326)
chr7 (168-284)||(45550994-45551111)
chr7 (189-285)||(41970883-41970979)
chr7 (212-282)||(45551805-45551875)
chr7 (212-284)||(5997611-5997683)
chr7 (213-284)||(43744560-43744631)
chr7 (212-285)||(28778099-28778172)
chr7 (187-281)||(27258082-27258177)
chr7 (208-281)||(27268238-27268311)
chr7 (223-280)||(31858925-31858982)
chr7 (234-284)||(38887327-38887377)
chr7 (234-282)||(27875931-27875979)
[»] chr6 (13 HSPs)
chr6 (189-283)||(19237580-19237674)
chr6 (212-285)||(10792478-10792551)
chr6 (213-283)||(25359496-25359566)
chr6 (212-284)||(10793579-10793651)
chr6 (169-285)||(5860545-5860661)
chr6 (212-281)||(7001773-7001842)
chr6 (189-284)||(17279880-17279975)
chr6 (189-280)||(17280676-17280767)
chr6 (222-280)||(8683866-8683924)
chr6 (189-282)||(29375020-29375113)
chr6 (234-285)||(12441728-12441779)
chr6 (169-285)||(8238064-8238181)
chr6 (235-283)||(28522618-28522666)
[»] chr4 (26 HSPs)
chr4 (189-284)||(11791357-11791452)
chr4 (213-282)||(12921863-12921932)
chr4 (189-281)||(6311761-6311853)
chr4 (189-283)||(23089247-23089341)
chr4 (189-285)||(23088271-23088367)
chr4 (168-281)||(31914522-31914636)
chr4 (213-283)||(12921126-12921196)
chr4 (208-281)||(31135169-31135242)
chr4 (189-284)||(12206760-12206855)
chr4 (169-283)||(34836747-34836862)
chr4 (189-285)||(34837948-34838044)
chr4 (189-285)||(6310814-6310910)
chr4 (189-277)||(11792295-11792383)
chr4 (190-281)||(20627526-20627617)
chr4 (189-257)||(34978367-34978435)
chr4 (189-283)||(12210895-12210989)
chr4 (191-285)||(31908332-31908426)
chr4 (221-280)||(31689177-31689236)
chr4 (212-283)||(31135898-31135969)
chr4 (221-286)||(48315194-48315259)
chr4 (189-257)||(42523225-42523293)
chr4 (221-280)||(48314367-48314426)
chr4 (217-285)||(50432820-50432888)
chr4 (221-272)||(20628347-20628398)
chr4 (221-281)||(41164177-41164237)
chr4 (235-280)||(42523970-42524015)
[»] chr2 (11 HSPs)
chr2 (189-284)||(45631116-45631211)
chr2 (213-285)||(9243989-9244061)
chr2 (212-281)||(16591526-16591595)
chr2 (206-285)||(39240848-39240927)
chr2 (208-282)||(18237619-18237693)
chr2 (221-282)||(18767578-18767639)
chr2 (212-273)||(9244251-9244312)
chr2 (212-285)||(18236652-18236725)
chr2 (182-285)||(32667353-32667457)
chr2 (212-285)||(5483914-5483987)
chr2 (189-257)||(29558175-29558242)
[»] chr1 (12 HSPs)
chr1 (189-280)||(24790827-24790918)
chr1 (212-284)||(34269084-34269156)
chr1 (212-284)||(34275319-34275391)
chr1 (212-285)||(34267971-34268044)
chr1 (207-285)||(42026891-42026969)
chr1 (207-284)||(42031688-42031765)
chr1 (189-285)||(17239383-17239479)
chr1 (189-284)||(16801969-16802064)
chr1 (213-284)||(17238593-17238664)
chr1 (235-284)||(48572832-48572881)
chr1 (222-280)||(34361210-34361268)
chr1 (189-285)||(16802659-16802755)
[»] chr5 (5 HSPs)
chr5 (189-285)||(33471160-33471256)
chr5 (213-280)||(33471854-33471921)
chr5 (221-284)||(22671603-22671665)
chr5 (213-285)||(31240003-31240075)
chr5 (209-283)||(30667861-30667935)
[»] scaffold0006 (2 HSPs)
scaffold0006 (213-285)||(162458-162530)
scaffold0006 (237-285)||(162891-162939)
[»] scaffold0015 (1 HSPs)
scaffold0015 (234-283)||(45330-45379)
[»] scaffold0112 (2 HSPs)
scaffold0112 (235-280)||(35003-35048)
scaffold0112 (235-284)||(35816-35865)


Alignment Details
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 23220099 - 23220003
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||||||| || |||||||||| |||| ||||||||  | ||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  23220099 aaaaacaaaaatatgggtatttatgtcaaaagaaaaaggtgcagcttgctaaaatagaccttcataaaaaagggtgggtctattgtagcaaacccca 23220003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 30971977 - 30972078
Alignment:
Q  183 tttttcaaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacc 282  Q
    |||||| |||| ||||| | || | ||| |||||||| ||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||    
T  30971977 tttttccaaaaaaaaaacaagggtttttgtgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctattgtagcaaacc 30972076  T
Q  283 cc 284  Q
    ||    
T  30972077 cc 30972078  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 23220855 - 23220946
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaa 280  Q
    ||||||||||||| || |||||||||| |||| ||||||||  | ||||||||||||||||||||||||   || |||||||||||||||||    
T  23220855 aaaaacaaaaatatgggtatttatgtcaaaagaaaaaggtgcagcttgctaaaatagaccttcataaaaaagggagggtctattgtagcaaa 23220946  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 16106019 - 16106095
Alignment:
Q  207 atttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaaccc 283  Q
    |||| |||||||  |||||||||  |||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  16106019 atttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaaccc 16106095  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 16113259 - 16113335
Alignment:
Q  207 atttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaaccc 283  Q
    |||| |||||||  |||||||||  |||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  16113259 atttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaaccc 16113335  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 16101596 - 16101519
Alignment:
Q  207 atttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccc 284  Q
    |||| |||||||  |||||||||  |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  16101596 atttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatga-gtgtgtctattgtagcaaacccc 16101519  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 30971370 - 30971285
Alignment:
Q  195 aaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaa 280  Q
    ||||| |||| | ||| |||||||  ||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  30971370 aaaaaaaggggtttttgtgtccaagtgaaaaagtgatggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaa 30971285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 12836789 - 12836696
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacc 282  Q
    ||||||||||||| |  |||||||||  |||| ||||||||    |||||||||||||||||||| |||  | |||||||||||||||||||||    
T  12836789 aaaaacaaaaatatgagtatttatgtgtaaagtaaaaggtgcaccttgctaaaatagaccttcatgaaaaaatgtgggtctattgtagcaaacc 12836696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 32744069 - 32744033
Alignment:
Q  221 gaaaaggtgttggttgctaaaatagaccttcataaaa 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  32744069 gaaaaggtgttggttgctaaaatagaccttcataaaa 32744033  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 18573588 - 18573509
Alignment:
Q  206 tatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||||||||| |||| ||||||||    ||||||||||||||||||||  ||   |||||||||||||||||||||||||    
T  18573588 tatttatgtctaaagaaaaaggtgcatcttgctaaaatagaccttcatgtaaaatggtgggtctattgtagcaaacccca 18573509  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 1637573 - 1637631
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctat 271  Q
    ||||||| ||||||||| |  |||||||||||||||||||||||||||  |||||||||    
T  1637573 gtccaaatgaaaaggtgctaattgctaaaatagaccttcataaaatgaaatgggtctat 1637631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 5152430 - 5152523
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacc 282  Q
    ||||||||||| | |||| |||  ||||||| |||||||||    |||||||||||||||||||| ||||||| | |||||||||||||||||||    
T  5152430 aaaaacaaaaacatggatcttttggtccaaatgaaaaggtgccacttgctaaaatagaccttcataaaaatga-gcgggtctattgtagcaaacc 5152523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 28965887 - 28965773
Alignment:
Q  169 cctttagttttaactttttcaaaaa-caaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggt 267  Q
    ||||||||||||| ||  ||||||| |||||||| || | |||| ||||||  ||||||||||| |||| ||||||| || |||||||||  | ||||||    
T  28965887 cctttagttttaatttgctcaaaaaacaaaaataagggtttttaggtccaattgaaaaggtgtttgttgataaaataaactttcataaaaataagtgggt 28965788  T
Q  268 ctattgtagcaaacc 282  Q
    ||||| ||| |||||    
T  28965787 ctattatagaaaacc 28965773  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 37731864 - 37731935
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||||||||||||||||||   ||||||||||| ||||||| |||||   | ||||||||||||||||||||||    
T  37731864 tgtccaaaggaaaaggtgtatcttgctaaaatacaccttcacaaaat--agagggtctattgtagcaaacccca 37731935  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 1636939 - 1636848
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaa 280  Q
    ||||||||||| | || | ||| |||||||| |||||| |||||||||| |||||||| |||||| ||||||| |||  ||||||||||||||    
T  1636939 aaaaacaaaaacaagggtctttgtgtccaaatgaaaagatgttggttgcaaaaatagatcttcatgaaaatga-gtgaatctattgtagcaaa 1636848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 37730990 - 37730902
Alignment:
Q  172 ttagttttaactttttcaaaaa-caaaaatagggatattta-tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaat 258  Q
    ||||||||  ||||| |||||| |||||||| ||||||||  ||||||||||||||||||    ||||||||||||||||||| |||||    
T  37730990 ttagttttttcttttacaaaaagcaaaaatatggatattttgtgtccaaaggaaaaggtgcatcttgctaaaatagaccttcacaaaat 37730902  T

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Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 42757669 - 42757602
Alignment:
Q  217 aaaggaaaaggtgttggttgctaaaatagaccttcataaaa-tgaggtgggtctattgtagcaaacccc 284  Q
    |||| ||||||||  | ||||||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  42757669 aaagcaaaaggtgcagcttgctaaaataaaccttcataaaaatgag-tgggtctattgtagcaaacccc 42757602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 1274129 - 1274180
Alignment:
Q  234 ttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||||||||||||||||||| |||  | || |||||||||||||||||||||    
T  1274129 ttgctaaaatagaccttcatgaaaataagttggtctattgtagcaaacccca 1274180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 42758382 - 42758466
Alignment:
Q  191 aaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcata-aaatgaggtgggtctattgta 275  Q
    ||||||| | |||| ||||| ||| |||||||||| |||  | |||||||||||||||||||||  ||||| ||||||||||||||    
T  42758382 aaacaaataaaggggtatttttgtacaaaggaaaatgtgcagcttgctaaaatagaccttcatattaatga-gtgggtctattgta 42758466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 15869725 - 15869793
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaac 281  Q
    ||||||| |||||||||||| |||||||| |  | ||||||||||  | |||||| |||||||||||||    
T  15869725 gtccaaatgaaaaggtgttgattgctaaagttaatcttcataaaaataagtgggtttattgtagcaaac 15869793  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 33147445 - 33147329
Alignment:
Q  168 tcctttagttttaactttttcaaaaa-caaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtggg 266  Q
    ||||||||| |||| ||| ||||||| |||||||| ||| ||||||||||||  |||||||||    ||||||||||||| |||||| ||||||||||||    
T  33147445 tcctttagtattaattttctcaaaaaacaaaaatatggacatttatgtccaagtgaaaaggtgcatcttgctaaaatagatcttcatgaaatgaggtggg 33147346  T
Q  267 tctattgtagcaaaccc 283  Q
    |||||||||||||||||    
T  33147345 tctattgtagcaaaccc 33147329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 40929858 - 40929931
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaaccccac 286  Q
    ||||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  40929858 gtccaaatgaaaaggtgttggttgctaaaataaaccttcataaaaatga-gtgggtctattgtagcaaaccccac 40929931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 54285810 - 54285887
Alignment:
Q  207 atttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccc 284  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  54285810 atttgtgtccaaatgaaaaggtgtaggttgctaaaatagaccttcataaaaatga-gtgggtctattgtagcaaacccc 54285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 33148276 - 33148368
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaac 281  Q
    ||||||||||| | ||  ||||||||||||  |||||||||    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  33148276 aaaaacaaaaacatgggcatttatgtccaagtgaaaaggtgcaccttgctaaaatagaccttcataaaatgaggtgggtttattgtagcaaac 33148368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 2841207 - 2841274
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaa 280  Q
    ||||||| ||||||||||| |  ||||||||||||||||||||||||| |||||||||||||||||||    
T  2841207 gtccaaatgaaaaggtgtttggcgctaaaatagaccttcataaaatgaagtgggtctattgtagcaaa 2841274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 27359844 - 27359908
Alignment:
Q  221 gaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  27359844 gaaaaggtgttgtttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaacccca 27359908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 4301001 - 4300930
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaaccc 283  Q
    |||||||  |||||||||||||||||||||||||| |||||| |||  | ||||||||||||||||||||||    
T  4301001 tgtccaagtgaaaaggtgttggttgctaaaatagatcttcatgaaaataagtgggtctattgtagcaaaccc 4300930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 28422854 - 28422918
Alignment:
Q  221 gaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  28422854 gaaaaggtgatggttgctaaaatagactttcataaaaatga-gtgggtctattgtagcaaacccca 28422918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 39645391 - 39645440
Alignment:
Q  234 ttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaaccc 283  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  39645391 ttgctaaaatggaccttcataaaaagaggtgggtctattgtagcaaaccc 39645440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 27473925 - 27473853
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccc 284  Q
    ||||||||||||||||||    ||||||||||||||||||| |||||   |||||||||||||||||||||||    
T  27473925 tgtccaaaggaaaaggtgcatcttgctaaaatagaccttcacaaaatagagtgggtctattgtagcaaacccc 27473853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 2840271 - 2840201
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaaccc 283  Q
    ||||||||  |||||||| ||| ||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  2840271 tgtccaaataaaaaggtgctggatgctaaaatagacttt-ataaaatgaagtgggtctattgtagcaaaccc 2840201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 27317475 - 27317548
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||| || |||||||||||| ||||||||||| |||||||| ||||||| | ||||||||||||||||||||||    
T  27317475 tgtcctaatgaaaaggtgttgcttgctaaaataaaccttcatgaaaatga-gcgggtctattgtagcaaacccca 27317548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 8652200 - 8652108
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacc 282  Q
    |||| |||||||| |||||||| |||| |||||||||||      ||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  8652200 aaaagcaaaaatatggatatttgtgtctaaaggaaaaggcacaccttg-taaaatagaccttcatgaaaagaggtgggtctattgtagcaaacc 8652108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 27474880 - 27474953
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||| |||||||||   |||||||||||||| |||| |||||   ||||||||||||||||||||||||    
T  27474880 tgtccaaagaaaaaggtgtatcttgctaaaatagacgttcacaaaatagagtgggtctattgtagcaaacccca 27474953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 17619139 - 17619210
Alignment:
Q  207 atttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagca 278  Q
    |||| |||||||  ||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  17619139 atttgtgtccaagtgaaaaggtactggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagca 17619210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 39644603 - 39644535
Alignment:
Q  217 aaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||| ||||||||  | |||||||||| ||||||||| ||| |||||||||||||||||||||| ||||    
T  39644603 aaagcaaaaggtgcagcttgctaaaatggaccttcatgaaaagaggtgggtctattgtagcaaaaccca 39644535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 14460134 - 14460201
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaa 280  Q
    ||||||| ||||||||| |  ||||||||||||||||||||||||| | || | ||||||||||||||    
T  14460134 gtccaaatgaaaaggtgctaattgctaaaatagaccttcataaaataaagttgatctattgtagcaaa 14460201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 29032824 - 29032875
Alignment:
Q  232 ggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaaccc 283  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  29032824 ggttgctaaaatagaccttcataaaaatga-atgggtctattgtagcaaaccc 29032875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 51341932 - 51341874
Alignment:
Q  222 aaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaa 280  Q
    ||||||||||||||| |||||||||||||||| | ||||| || ||||||||||||||||    
T  51341932 aaaaggtgttggttgttaaaatagaccttcatgagaatga-gtaggtctattgtagcaaa 51341874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 24858284 - 24858402
Alignment:
Q  168 tcctttagttttaactttttcaaaaaca-aaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtggg 266  Q
    |||||||||||| || ||||||||||   |||| | |||| ||| | ||||||| ||||||||   | ||||||||| | |||||||||||   ||||||    
T  24858284 tcctttagttttgaccttttcaaaaaagcaaaacatggatctttttatccaaagcaaaaggtgaaagctgctaaaatgggccttcataaaaaagggtggg 24858383  T
Q  267 tctattgtagcaaacccca 285  Q
    |||||||||||||| ||||    
T  24858384 tctattgtagcaaatccca 24858402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 5995326 - 5995248
Alignment:
Q  207 atttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  5995326 atttgtgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaacccca 5995248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 168 - 284
Target Start/End: Complemental strand, 45551111 - 45550994
Alignment:
Q  168 tcctttagttttaactttttcaaaaacaaaaa-tagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtggg 266  Q
    |||||||||||||| |||   ||||||||||| || || | ||| |||| ||| ||||||||||||||||||||||||||||||||| ||||   |||||    
T  45551111 tcctttagttttaattttacaaaaaacaaaaaataagggtctttttgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtggg 45551012  T
Q  267 tctattgtagcaaacccc 284  Q
    ||||||||||||||||||    
T  45551011 tctattgtagcaaacccc 45550994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 41970979 - 41970883
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||||| | || ||||  |||||||  |||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  41970979 aaaaacaaaaacaagggtattcttgtccaagtgaaaaggtgttggttgctaaaatagatcttcatgaaaatga-gtgggtctattgtagcaaacccca 41970883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 45551805 - 45551875
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacc 282  Q
    |||| ||| ||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||    
T  45551805 tgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctattgtagcaaacc 45551875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 5997611 - 5997683
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccc 284  Q
    |||||||  ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  5997611 tgtccaagtgaaaaggtgctggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaacccc 5997683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 43744631 - 43744560
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccc 284  Q
    |||||||| ||| ||||||| |||||||||| || ||||| ||||||| |||||||||||||||||||||||    
T  43744631 gtccaaagaaaagggtgttgcttgctaaaatggatcttcacaaaatgaagtgggtctattgtagcaaacccc 43744560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 28778099 - 28778172
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||| ||||||||||||| ||||||||||||||| || ||||||| |||||||||||| |||||| ||||    
T  28778099 tgtccaaagaaaaaggtgttggtcgctaaaatagaccttgatgaaaatga-gtgggtctattgaagcaaaaccca 28778172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 27258082 - 27258177
Alignment:
Q  187 tcaaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaataga-ccttcat-aaaatgaggtgggtctattgtagcaaac 281  Q
    ||||||| ||||||| || | |||||||||||  |||||||||||| ||||||||||||| ||||||| ||||||| |||| ||||||| |||||||    
T  27258082 tcaaaaaaaaaaataagggtctttatgtccaagtgaaaaggtgttgattgctaaaatagacccttcatgaaaatga-gtggatctattgcagcaaac 27258177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 27268238 - 27268311
Alignment:
Q  208 tttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaac 281  Q
    |||||||||||  ||||||||| || |||||||||||||||||||| ||||||| |||| ||||||||| |||||    
T  27268238 tttatgtccaagtgaaaaggtgctgattgctaaaatagaccttcatgaaaatga-gtggatctattgtatcaaac 27268311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 31858982 - 31858925
Alignment:
Q  223 aaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaa 280  Q
    ||||||| |||||| |||||||||||||| ||||||||  |||||||||| |||||||    
T  31858982 aaaggtgatggttgttaaaatagaccttcgtaaaatgaaatgggtctattatagcaaa 31858925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 38887377 - 38887327
Alignment:
Q  234 ttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccc 284  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  38887377 ttgctaaaatagaccttcatgaaaatga-gtgagtctattgtagcaaacccc 38887327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 27875979 - 27875931
Alignment:
Q  234 ttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacc 282  Q
    |||||||||||||||||||| |||  ||| || ||||||||||||||||    
T  27875979 ttgctaaaatagaccttcatgaaaaaaggcggatctattgtagcaaacc 27875931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 19237580 - 19237674
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaaccc 283  Q
    ||||||||||| | || | |||||||||||  ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  19237580 aaaaacaaaaacaagggtctttatgtccaagtgaaaaggtgttggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaaccc 19237674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 10792551 - 10792478
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  10792551 tgtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaatggaatgggtctattgtagcaaacccca 10792478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 25359566 - 25359496
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaaccc 283  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  25359566 gtccaaataaaaaggtgttggttgctaaaatagactttcataaaatgaagtgagtctattgtagcaaaccc 25359496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 10793579 - 10793651
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccc 284  Q
    |||||||  |||||||||||| ||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  10793579 tgtccaagtgaaaaggtgttgcttgctaaaatagaccttgataaaatggagtgggtctattgtagcaaacccc 10793651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 5860661 - 5860545
Alignment:
Q  169 cctttagttttaactttttcaaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggt 267  Q
    |||| ||||||| ||||| ||||||  ||||||  | | ||| |||||||| ||||| ||||| |||||||||||| |||||||| ||||||| ||||||    
T  5860661 ccttcagttttagcttttccaaaaaacaaaataatggtttttttgtccaaatgaaaatgtgtttgttgctaaaatacaccttcataaaaatga-gtgggt 5860563  T
Q  268 ctattgtagcaaacccca 285  Q
    ||||||||||||||||||    
T  5860562 ctattgtagcaaacccca 5860545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 7001773 - 7001842
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaac 281  Q
    |||||||  ||||||||||||  |||||||||||||||||||||||||| |||||||||||| |||||||    
T  7001773 tgtccaagtgaaaaggtgttgcatgctaaaatagaccttcataaaatgaagtgggtctattgcagcaaac 7001842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 17279975 - 17279880
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaa-tgaggtgggtctattgtagcaaacccc 284  Q
    ||||||||||||| || ||||| |||||||   |||||||| ||||||||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  17279975 aaaaacaaaaatatgggtatttgtgtccaagtaaaaaggtgctggttgctaaaatagaccttcataaaaatgaa-taggtctattgtagcaaacccc 17279880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 17280676 - 17280767
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaa 280  Q
    ||||||||||||| ||  |||| |||||||  |||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||    
T  17280676 aaaaacaaaaatatgggcatttgtgtccaagtgaaaaggtgttggttgctaaaatagaccttaatgaaaatga-gtgggtcaattgtagcaaa 17280767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 8683866 - 8683924
Alignment:
Q  222 aaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaa 280  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  8683866 aaaagatgttggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaa 8683924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 29375020 - 29375113
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacc 282  Q
    ||||||||||| | |||||||| |||||||  ||||||||| |  |||||||||| ||||||||| ||||||| |||| ||||||||||||||||    
T  29375020 aaaaacaaaaacatggatatttttgtccaagtgaaaaggtgctccttgctaaaatggaccttcatgaaaatga-gtggatctattgtagcaaacc 29375113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 12441728 - 12441779
Alignment:
Q  234 ttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||| ||||    
T  12441728 ttgctaaaatggaccttcatgaaaagaggtgggtctattgtagcaaatccca 12441779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 8238181 - 8238064
Alignment:
Q  169 cctttagttttaactttttcaaaaa-caaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtggg 266  Q
    ||||||||||||| ||  ||||||| ||||||||  | | |||  ||||||  |||||||||||||||| || ||||||| ||||| ||||||| ||| |    
T  8238181 cctttagttttaatttgctcaaaaaacaaaaataaaggtttttgggtccaattgaaaaggtgttggttgatagaatagactttcataaaaatga-gtgag 8238083  T
Q  267 tctattgtagcaaacccca 285  Q
    |||||||||||||||||||    
T  8238082 tctattgtagcaaacccca 8238064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 28522666 - 28522618
Alignment:
Q  235 tgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaaccc 283  Q
    |||||||||||| ||||| |||||   ||||||||||||||||||||||    
T  28522666 tgctaaaatagagcttcacaaaatagagtgggtctattgtagcaaaccc 28522618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 11791452 - 11791357
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccc 284  Q
    ||||| |||||||||| | ||| |||||||  |||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  11791452 aaaaataaaaataggggtctttgtgtccaagtgaaaaggtattgcttgctaaaatagacattcataaaatgaagtgggtctattgtagcaaacccc 11791357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 12921863 - 12921932
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacc 282  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  12921863 gtccaaatgaaaaggtgctggatgctaaaatagaccttcataaaatgaagtgggtctattgtagcaaacc 12921932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 6311761 - 6311853
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaac 281  Q
    ||||||||||| | ||| ||||||||||||| |||||||||    |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  6311761 aaaaacaaaaacatggacatttatgtccaaatgaaaaggtgcaccttgctaaaatagaccttcatgaaatgaggtgggtctattatagcaaac 6311853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 23089247 - 23089341
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaaccc 283  Q
    ||||||||||||| || ||||  |||||||  ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  23089247 aaaaacaaaaataagggtattcttgtccaagtgaaaaggtgttggttgctaaaatagacctacatgaaaatga-gtgggtctattgtagcaaaccc 23089341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 23088367 - 23088271
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||||||| || ||||  |||| ||  || |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  23088367 aaaaacaaaaataagggtattcttgtcgaagtgagaaggtgttggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaacccca 23088271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 31914636 - 31914522
Alignment:
Q  168 tcctttagttttaactttttcaaaaa-caaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgg 265  Q
    |||||||||||||  |||| |||||| |||||||| || | ||| |||||||  ||||||||| |||||||||||||||| |||||| ||||||| ||||    
T  31914636 tcctttagttttagtttttccaaaaaacaaaaataagggtctttgtgtccaagtgaaaaggtgctggttgctaaaatagatcttcatgaaaatga-gtgg 31914538  T
Q  266 gtctattgtagcaaac 281  Q
    ||||||||||||||||    
T  31914537 gtctattgtagcaaac 31914522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 12921196 - 12921126
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaaccc 283  Q
    ||||||| ||||||||| ||| |||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  12921196 gtccaaatgaaaaggtgctggatgctaaaataaaccttcataaaatgaagtgcgtctattgtagcaaaccc 12921126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 31135242 - 31135169
Alignment:
Q  208 tttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaac 281  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  31135242 tttatgtccaagtgaaaaggtgttggttgctaaaatagaccttcatgaaaatga-gttggtctattgtagcaaac 31135169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 12206855 - 12206760
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccc 284  Q
    ||||||||||||  ||  |||| |||||||  |||||||||  |||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  12206855 aaaaacaaaaatgtggccatttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcataaaaatga-gtgggtctattgtagcaaacccc 12206760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 169 - 283
Target Start/End: Complemental strand, 34836862 - 34836747
Alignment:
Q  169 cctttagttttaactttttcaaaaa-caaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggt 267  Q
    ||||||||||||| ||  ||||||| |||||||| || | |||  ||||||  |||||| ||||||||| ||||||||||||||||||||  | ||||||    
T  34836862 cctttagttttaatttgctcaaaaaacaaaaataagggtttttgggtccaattgaaaagatgttggttgataaaatagaccttcataaaaataagtgggt 34836763  T
Q  268 ctattgtagcaaaccc 283  Q
    ||||||||| ||||||    
T  34836762 ctattgtagaaaaccc 34836747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 34837948 - 34838044
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||||||| |  | ||| |||||||  ||||| |||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||    
T  34837948 aaaaacaaaaataagtgtttttgtgtccaattgaaaaagtgttggttgctaaaataaaacttcataaaaatga-gtgggtctattgtagcaaacccca 34838044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 6310910 - 6310814
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||||| |  || ||||||||||||  |||||||||    || ||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  6310910 aaaaacaaaaacatagacatttatgtccaagtgaaaaggtgcaccttcctaaaatagaccttcatgaaatgaggtggatctattgtagtaaacccca 6310814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 11792295 - 11792383
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagc 277  Q
    ||||||||||||| || | ||| |||||||  | |||||||| | ||||||||||||||||||||||| ||| ||| ||||||||||||    
T  11792295 aaaaacaaaaataagggtttttgtgtccaagtgtaaaggtgtagcttgctaaaatagaccttcataaactgaagtgcgtctattgtagc 11792383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 281
Target Start/End: Complemental strand, 20627617 - 20627526
Alignment:
Q  190 aaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaac 281  Q
    |||||||||| | || | ||| |||||||  ||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  20627617 aaaacaaaaacaagggtctttgtgtccaagtgaaaaggtgttgggtgctaaaatagactttcatgaaaatga-gtgggtctattgtagcaaac 20627526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 34978435 - 34978367
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaa 257  Q
    ||||||||||||| || | |||| ||||||  |||||||||||||||| ||||||||||||||||||||    
T  34978435 aaaaacaaaaataagggtttttaggtccaattgaaaaggtgttggttgataaaatagaccttcataaaa 34978367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 12210895 - 12210989
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaaccc 283  Q
    ||||||||||||  ||  |||| |||||||  |||||||||  |||||||||||||||||||||| ||||||| || |||||||||||||||||||    
T  12210895 aaaaacaaaaatgtgggcatttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatga-gttggtctattgtagcaaaccc 12210989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 31908332 - 31908426
Alignment:
Q  191 aaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||| | |||| ||||| | | ||||||||||||||    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  31908332 aaacaaataaaggggtatttttatacaaaggaaaaggtgcaacttgctaaaatagaccttcataaaaatga-gtgggtctattgtagcaaacccca 31908426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 31689236 - 31689177
Alignment:
Q  221 gaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaa 280  Q
    |||||||||  |||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  31689236 gaaaaggtgcaggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaa 31689177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 31135898 - 31135969
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaaccc 283  Q
    |||||||  |||||||||||||||||||||||| |||||||| ||||    ||| |||||||||||||||||    
T  31135898 tgtccaagtgaaaaggtgttggttgctaaaatacaccttcatgaaattgaatggatctattgtagcaaaccc 31135969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 48315194 - 48315259
Alignment:
Q  221 gaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaaccccac 286  Q
    |||||||||||| ||||||||||| ||||| || |||  | ||||||||||||||||||| |||||    
T  48315194 gaaaaggtgttgcttgctaaaataaacctttatgaaaataagtgggtctattgtagcaaatcccac 48315259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 42523293 - 42523225
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaa 257  Q
    ||||||||||||| || | |||  ||||||| |||||||||||  ||||||||| ||||||||||||||    
T  42523293 aaaaacaaaaatatgggtcttttggtccaaatgaaaaggtgttacttgctaaaagagaccttcataaaa 42523225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 48314426 - 48314367
Alignment:
Q  221 gaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaa 280  Q
    |||||||||||| |||||||||||||| ||||| ||||||| |||||||||||| ||||||    
T  48314426 gaaaaggtgttgcttgctaaaatagactttcatgaaaatga-gtgggtctattgcagcaaa 48314367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 50432820 - 50432888
Alignment:
Q  217 aaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||| ||||||||  | |||||||||| ||||||||||||| || ||||||||||| || |||||||||    
T  50432820 aaagcaaaaggtgcagcttgctaaaatggaccttcataaaaagatgtgggtctattataacaaacccca 50432888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 20628347 - 20628398
Alignment:
Q  221 gaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctatt 272  Q
    |||||||||||| ||| ||||||||||||||||||||   ||||||||||||    
T  20628347 gaaaaggtgttgcttggtaaaatagaccttcataaaaatgggtgggtctatt 20628398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 41164177 - 41164237
Alignment:
Q  221 gaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaac 281  Q
    ||||| ||||||||||||||||||||| ||||| |||||||  |||||||| ||||||||||    
T  41164177 gaaaatgtgttggttgctaaaatagactttcataaaaatga-atgggtctactgtagcaaac 41164237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 42524015 - 42523970
Alignment:
Q  235 tgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaa 280  Q
    ||||||||| |||||||||||||  || ||||||||||||||||||    
T  42524015 tgctaaaatggaccttcataaaagaagatgggtctattgtagcaaa 42523970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 189 - 284
Target Start/End: Original strand, 45631116 - 45631211
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccc 284  Q
    ||||||||||||| || | |||||||||||  | |||||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  45631116 aaaaacaaaaataagggtttttatgtccaagtgtaaaggtgtagcttgctaaaatagaccttcataaaatgaagtgggtctattgtaacaaacccc 45631211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 9244061 - 9243989
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||| ||||||||| | | |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9244061 gtccaaatgaaaaggtgctcggtgctaaaatagaccttcataaaatgaagtgggtctattgtagcaaacccca 9243989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 16591526 - 16591595
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaac 281  Q
    |||||||  ||||||||||||||||||||||||||||||||| |||| |  |||||||||||||||||||    
T  16591526 tgtccaagtgaaaaggtgttggttgctaaaatagaccttcatgaaattaaatgggtctattgtagcaaac 16591595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 39240848 - 39240927
Alignment:
Q  206 tatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||||||||| |||| ||||||||    |||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  39240848 tatttatgtctaaagaaaaaggtgcatcttgctaaaatagaccttcatgaaaatg-ggtgggtctattgtagcaaacccca 39240927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 18237619 - 18237693
Alignment:
Q  208 tttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacc 282  Q
    ||||||||||||||||||||||    ||||||||||||||||||| |||||   |||||||||||||| ||||||    
T  18237619 tttatgtccaaaggaaaaggtgcatcttgctaaaatagaccttcacaaaatagagtgggtctattgtaacaaacc 18237693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 18767578 - 18767639
Alignment:
Q  221 gaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacc 282  Q
    |||||||||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||    
T  18767578 gaaaaggtgttggttgctaaaatagacctttataaaaatga-gtgagtctattgtagcaaacc 18767639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 9244312 - 9244251
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattg 273  Q
    |||||||  ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  9244312 tgtccaactgaaaaggtgttggatgctaaaatagaccttcataaaaatga-gtgggtctattg 9244251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 18236725 - 18236652
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||||||||||||    ||||||||||||||||||| |||||   | ||||||||| ||||||||||||    
T  18236725 tgtccaaaggaaaaggtgcatcttgctaaaatagaccttcacaaaatagagcgggtctattatagcaaacccca 18236652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 285
Target Start/End: Original strand, 32667353 - 32667457
Alignment:
Q  182 ctttttcaaaaacaaaaatagggatatttatgtccaaa-ggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaa 280  Q
    ||||||||||||  ||||||  | | ||| |||||||| ||||||| || |  |||||||||||||||||||  |||   ||||||||||||||||||||    
T  32667353 ctttttcaaaaaacaaaataaaggtctttttgtccaaatggaaaagctgctttttgctaaaatagaccttcaagaaaaagggtgggtctattgtagcaaa 32667452  T
Q  281 cccca 285  Q
    |||||    
T  32667453 cccca 32667457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 5483914 - 5483987
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||||||  ||||||||||||| |||||||||||||||| || ||||||| || |||||||| ||||||| ||||    
T  5483914 tgtccaattgaaaaggtgttggatgctaaaatagacctttatgaaaatga-gttggtctattatagcaaatccca 5483987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 29558242 - 29558175
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaa 257  Q
    ||||||||||| | | || ||| |||||||   ||||||||||||||||| ||||||||||||||||||    
T  29558242 aaaaacaaaaacaagaatctttgtgtccaagtaaaaaggtgttggttgct-aaatagaccttcataaaa 29558175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 24790827 - 24790918
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaa 280  Q
    |||||||||||||||| | ||| |||||||  ||||| |||||| || |||||||||||||||||||||||| |||||||||||||||||||    
T  24790827 aaaaacaaaaataggggtttttgtgtccaagtgaaaaagtgttgctttctaaaatagaccttcataaaatgaagtgggtctattgtagcaaa 24790918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 34269084 - 34269156
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccc 284  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  34269084 tgtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaatggaatgggtctattgtagcaaacccc 34269156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 34275319 - 34275391
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccc 284  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  34275319 tgtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaatggaatgggtctattgtagcaaacccc 34275391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 34268044 - 34267971
Alignment:
Q  212 tgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||||||  |||||||||||| ||||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  34268044 tgtccaagtgaaaaggtgttgcttgctaaaatagaccttgataaaatggagtgggtctattgtagcaaacccca 34267971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 42026969 - 42026891
Alignment:
Q  207 atttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    |||| |||||||  |||||||||  |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  42026969 atttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaacccca 42026891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 42031688 - 42031765
Alignment:
Q  207 atttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccc 284  Q
    |||| |||||||  |||||||||  |||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  42031688 atttgtgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatga-gtgggtctattgtagcaaacccc 42031765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 17239383 - 17239479
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||||| | || | |||  ||||||| ||||||||| |  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  17239383 aaaaacaaaaacatgggttttttggtccaaatgaaaaggtgctacttgctaaaatagaccttcataaaaatga-gtgggtctattgtagcaaacccca 17239479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 16802064 - 16801969
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccc 284  Q
    ||||||||||| | || ||||| |||||||  |||||||||    |||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  16802064 aaaaacaaaaacatgggtatttttgtccaagtgaaaaggtgccccttgctaaaatagaccttcatgaaaatgag-tgggtctattgtagcaaacccc 16801969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 17238664 - 17238593
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccc 284  Q
    ||||||| ||||||||| |  |||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  17238664 gtccaaacgaaaaggtgctacttgctaaaatagaccttcataaaaatga-gtgggtctattgtagcaaacccc 17238593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 48572832 - 48572881
Alignment:
Q  235 tgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccc 284  Q
    |||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  48572832 tgctaaaatagaccttaacaaaaagaggtgggtctattgtagcaaacccc 48572881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 34361268 - 34361210
Alignment:
Q  222 aaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaa 280  Q
    |||||| |||||||||||||||| ||||||||||||  | |||| |||||| |||||||    
T  34361268 aaaaggcgttggttgctaaaataaaccttcataaaaataagtggttctattatagcaaa 34361210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 16802659 - 16802755
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||||||| || |  || |||||||  ||||||||  |  ||||||||||||||||| || ||||||| ||||||||||||||||||| ||||    
T  16802659 aaaaacaaaaatatgggtccttttgtccaagtgaaaaggtacttcttgctaaaatagacctttataaaaatga-gtgggtctattgtagcaaatccca 16802755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 33471256 - 33471160
Alignment:
Q  189 aaaaacaaaaatagggatatttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||||||| | || | ||| |||||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  33471256 aaaaacaaaaacaagggtctttgtgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatga-atgggtctattgtagcaaacccca 33471160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 33471854 - 33471921
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaa 280  Q
    ||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  33471854 gtccaaatgaaaaggtgctagttgctaaaatagaccttcataaaatgaagtgggtctattgtagcaaa 33471921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 22671665 - 22671603
Alignment:
Q  221 gaaaaggtgttggttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaacccc 284  Q
    |||||||||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||||    
T  22671665 gaaaaggtgttggttgttaaaatagaccttcatgaaaatga-gtgggtc-attgtagcaaacccc 22671603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 31240075 - 31240003
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||| ||||||||||  | ||||||||| |||||| | |||| ||||||| |||||||||||||||||||    
T  31240075 gtccaaatgaaaaggtgtatgatgctaaaatggaccttaacaaaaagaggtggatctattgtagcaaacccca 31240003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 30667935 - 30667861
Alignment:
Q  209 ttatgtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaaccc 283  Q
    ||||||| |||| ||||||||    ||||||||||| |||||||| |||  ||||||||||||||||||||||||    
T  30667935 ttatgtctaaagtaaaaggtgcaccttgctaaaatataccttcatgaaaaaaggtgggtctattgtagcaaaccc 30667861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 162530 - 162458
Alignment:
Q  213 gtccaaaggaaaaggtgttggttgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||| |||||||||   | || |||||| |||||||| |||| |||||||||||||||||||||||||||    
T  162530 gtccaaatgaaaaggtgcatgatgttaaaatggaccttcacaaaaagaggtgggtctattgtagcaaacccca 162458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 162891 - 162939
Alignment:
Q  237 ctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccca 285  Q
    ||||||| |||||||| |||| |||||||||||||||||||||| ||||    
T  162891 ctaaaatggaccttcacaaaaagaggtgggtctattgtagcaaaaccca 162939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 45379 - 45330
Alignment:
Q  234 ttgctaaaatagaccttcat-aaaatgaggtgggtctattgtagcaaaccc 283  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  45379 ttgctaaaatagaccttcatgaaaatgag-tgggtctattgtagcaaaccc 45330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 35048 - 35003
Alignment:
Q  235 tgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaa 280  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||    
T  35048 tgctaaaatagaccttcatgaaaaaaggtgggtctattgtagcaaa 35003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 35816 - 35865
Alignment:
Q  235 tgctaaaatagaccttcataaaatgaggtgggtctattgtagcaaacccc 284  Q
    ||||||||||||||||||| |||  ||| |||||||||||||||||||||    
T  35816 tgctaaaatagaccttcatgaaaaaaggcgggtctattgtagcaaacccc 35865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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