View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_1 (Length: 1034)
Name: NF17777_low_1
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 7e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 543 - 740
Target Start/End: Original strand, 45333640 - 45333836
Alignment:
| Q |
543 |
tcataggaaaatgttgcagagccagtatacccagtatccttctccttgaatttgtccgttagtacctgcaatacaa----tcaaaagtgaggtattttat |
638 |
Q |
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| T |
45333640 |
tcataggagaatgttgcaaagccagtatacccagtatccttctccttgaatttgtctgttagtccctgcaatacacacagtcaatagtgaggtattttat |
45333739 |
T |
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| Q |
639 |
cttgccacgaggaacatatcatattataggcttgatttcttgctccctaagttagagcaaaatttatggttcatatactaggaaaataaaaccaggttga |
738 |
Q |
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| T |
45333740 |
catccaatgaggaa-----catattataagcttgatttctagctccctgagttagagcaaaatttaaggttcatatactaggaaaacaaaaccaggttga |
45333834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 354 - 498
Target Start/End: Original strand, 45333461 - 45333607
Alignment:
| Q |
354 |
gtgttgtaaagaacacct---catcactcaagtaaaatgacatcaaccattgttcaattataaataaaaagcagggaacaaaagcatattataaagctat |
450 |
Q |
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| T |
45333461 |
gtgttgtacagaacacctgatcatcactcaagtaaaatgacatcaaccatagttcaattgtaactaaacaacaggaaacaaaagcatattataaa-ttgt |
45333559 |
T |
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| Q |
451 |
ccaaagcaattcactcaaccacatacatccatctccaaaccaaattac |
498 |
Q |
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| T |
45333560 |
ccaaagcaattcagtcaaccacacacatccaactccaaaccaaattac |
45333607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 787 - 847
Target Start/End: Original strand, 45334126 - 45334186
Alignment:
| Q |
787 |
agaaattatagaacaatgtatttcgatagctcaccttcacagtaagacaacacctgcaata |
847 |
Q |
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| T |
45334126 |
agaaataacagaacaatgtatttcgatagctcaccttcacagtaagacaacacctgcaata |
45334186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 496 - 658
Target Start/End: Original strand, 20788196 - 20788362
Alignment:
| Q |
496 |
tactatcctaagctatcaagaatggtaggacagtctgcataaatgcctcataggaaaatgttgcagagccagtatacccagtatccttctccttgaattt |
595 |
Q |
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| T |
20788196 |
tactatcctaagctatcaggaatggcaggacggtcagcataaacgcctcataggaaaatgttgcagagccggtataccctgtatccttctccttgaattt |
20788295 |
T |
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| Q |
596 |
gtccgttagtacctgcaatacaatcaaa----agtgaggtattttatcttgccacgaggaacatatc |
658 |
Q |
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| T |
20788296 |
gtccgttagtccctgaaatacacacaaactaaagtcagatattttgtcttgccaaaaggaacatatc |
20788362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 803 - 894
Target Start/End: Original strand, 20788898 - 20788993
Alignment:
| Q |
803 |
tgtatttcgatagctcaccttcacagtaagacaacacctgcaatagtaaaca----aagagaatcagtttatcaatcgattttacacccaaacaga |
894 |
Q |
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| T |
20788898 |
tgtatttcaatagctcaccttcacagtaagacaacacctgcaacagcaaacaaaggaagagaatcaatttagcaatccattttacaccaaaacaga |
20788993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 619 - 740
Target Start/End: Complemental strand, 11271496 - 11271381
Alignment:
| Q |
619 |
tcaaaagtgaggtattttatcttgccacgaggaacatatcatattataggcttgatttcttgctccctaagttagagcaaaatttatggttcatatacta |
718 |
Q |
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| T |
11271496 |
tcaaaagtgaggtattttatcatccaatgaggaacatatcataa-----gcttgatttctagctccctgagttagatcaaaaattaaggttcatata-ga |
11271403 |
T |
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| Q |
719 |
ggaaaataaaaccaggttgatt |
740 |
Q |
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| T |
11271402 |
ggaaaataaaaccaggttgatt |
11271381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 43322821 - 43322747
Alignment:
| Q |
256 |
caaaattgacatatgaaaagtagtagtgttctaacaatttgagataaaagcaattgcatcatataacaccaccaa |
330 |
Q |
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| T |
43322821 |
caaaatcgaaatatgaaaagtagtagcatttggacaatttgagattaaagcaattgactcatttaacaccaccaa |
43322747 |
T |
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