View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17777_low_10 (Length: 460)
Name: NF17777_low_10
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Complemental strand, 10877260 - 10876824
Alignment:
| Q |
8 |
ccaagaatatgatttaaattttttctgtctccctcattcnnnnnnnttagtattaaataaacatattatatcagtttacnnnnnnnnnngggatgaatca |
107 |
Q |
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| T |
10877260 |
ccaataatatgatttaaattttttctgtctccctcattcaaaaaaattagtattaaataaacatattatatcagtttacttttttttt-gggatgaatta |
10877162 |
T |
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| Q |
108 |
ggtatctctatatgcaattgtataaactaatccattgaattgaatataacacgtgacaaaatttagttttcaaaataacgaaggaagaaaagaatttcgt |
207 |
Q |
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| T |
10877161 |
ggtatctctatatgcaattgtataaactaatccattgaattgaatataacacgtgacaaaatttagttttcaaaataacgaaggaagaaaagaatttcgt |
10877062 |
T |
|
| Q |
208 |
cattcttgatttgaagaaggtgacgaagttgtctaaagcgtagtaattaaaaagaaaaggttagttaataaatattctcgttctactcaaaacgttaatg |
307 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
10877061 |
cattcttgatttgaagagggtgacgaggttgtctaaagcgtagtaattaaaaagaaaaggttagttaacaaatcttctcgttctactcaaaacgttaatg |
10876962 |
T |
|
| Q |
308 |
gtgttccgttgtcaactggagcgactgcgtcagttagtaataatgattagcaaaatttgatgatcttacatgctaattttgaggtggtggtagaagatgt |
407 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
10876961 |
gtgttccgttgtcagttggagcgactgcatcagttagtaataatgattagcaaaatttaacgatcttacatgctaattttgaggtggtggtagaagatgt |
10876862 |
T |
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| Q |
408 |
ttgtgaaataggcaagtccattggggtgaagtttaaag |
445 |
Q |
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| T |
10876861 |
ttgtgaaataggcaagtccattggggtgaagtttaaag |
10876824 |
T |
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