View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17777_low_11 (Length: 443)

Name: NF17777_low_11
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17777_low_11
NF17777_low_11
[»] chr3 (2 HSPs)
chr3 (18-435)||(44901454-44901871)
chr3 (279-308)||(7671806-7671835)
[»] chr4 (3 HSPs)
chr4 (203-265)||(16601650-16601712)
chr4 (234-315)||(19842434-19842509)
chr4 (279-311)||(44957293-44957325)
[»] chr5 (2 HSPs)
chr5 (279-315)||(6560822-6560858)
chr5 (279-311)||(21605648-21605680)
[»] chr8 (3 HSPs)
chr8 (279-309)||(12801109-12801139)
chr8 (275-309)||(40548058-40548092)
chr8 (276-309)||(28090194-28090227)
[»] chr2 (3 HSPs)
chr2 (279-309)||(7467122-7467152)
chr2 (279-311)||(6884159-6884191)
chr2 (279-307)||(45690874-45690902)
[»] chr1 (4 HSPs)
chr1 (279-313)||(26011316-26011350)
chr1 (279-308)||(47209049-47209078)
chr1 (281-309)||(30547141-30547169)
chr1 (279-311)||(51184042-51184074)
[»] chr7 (3 HSPs)
chr7 (276-309)||(2088870-2088903)
chr7 (279-316)||(27800402-27800439)
chr7 (204-265)||(31311386-31311447)
[»] chr6 (3 HSPs)
chr6 (279-308)||(6975074-6975103)
chr6 (279-315)||(1371405-1371441)
chr6 (279-315)||(1379153-1379189)
[»] scaffold0604 (1 HSPs)
scaffold0604 (279-311)||(2020-2052)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 44901454 - 44901871
Alignment:
Q  18 ttttagtgcttcaataaaattattattcactgtaatttgtgaaatttcccgtgattttaaacataaacttcaactaacatcttttaacttcagtcaaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44901454 ttttagtgcttcaataaaattattattcactgtaatttgtgaaatttcccgtgattttaaacataaacttcaactaacatcttttaacttcagtcaaaaa 44901553  T
Q  118 tctaacatctctgtattttatgtagtaacttaaaaatagaaatcaagtgggattgtattacataaatggttactcttccaactttaaaaataattctttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44901554 tctaacatctctgtattttatgtagtaacttaaaaatagaaatcaagtgggattgtatcacataaatggttactcttccaactttaaaaataattctttt 44901653  T
Q  218 tcttcnnnnnnncaagtcatttaattattaatttaacggtttggtgtatcattagtagtatactcaaatttttgggtgtaccatagaatttgtcttatca 317  Q
    |||||       | |||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||     
T  44901654 tcttcaaaaaaactagtcatttaattattaatttaacggtttggggtatcatcaatagtatactcaaatttttgggtgtaccatagaatttgtcttatcg 44901753  T
Q  318 atatctatctacattgacatggagacaccttccttgtactagtaccattttgattatgaattttaaagttttttctgttgttcaaaaaagaaatggtgcg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44901754 atatctatctacattgacatggagacaccttccttgtactagtaccattttgattatgaattttaaagttttttctgttgttcaaaaaagaaatggtgcg 44901853  T
Q  418 gttaatgtatagtctgtg 435  Q
    |||||||| |||||||||    
T  44901854 gttaatgtttagtctgtg 44901871  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 308
Target Start/End: Complemental strand, 7671835 - 7671806
Alignment:
Q  279 actcaaatttttgggtgtaccatagaattt 308  Q
    ||||||||||||||||||||||||||||||    
T  7671835 actcaaatttttgggtgtaccatagaattt 7671806  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 16601712 - 16601650
Alignment:
Q  203 aaaaataattctttttcttcnnnnnnncaagtcatttaattattaatttaacggtttggtgta 265  Q
    ||||||||||||||||||||       ||| |||||||||||||||||||||| |||||||||    
T  16601712 aaaaataattctttttcttcaaaaatacaactcatttaattattaatttaacgatttggtgta 16601650  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 19842509 - 19842434
Alignment:
Q  234 tcatttaattattaatttaacggtttggtgtatcattagtagtatactcaaatttttgggtgtaccatagaatttgtcttat 315  Q
    |||||||||||||||||||||  |||||||||       | ||| |||||||||||||| |||||||||||||||| |||||    
T  19842509 tcatttaattattaatttaacaatttggtgtac------tggtacactcaaatttttggatgtaccatagaatttgccttat 19842434  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 44957293 - 44957325
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttgtc 311  Q
    ||||||||||||| |||||||||||||||||||    
T  44957293 actcaaatttttgagtgtaccatagaatttgtc 44957325  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 6560858 - 6560822
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttgtcttat 315  Q
    ||||||||| |||||||||||||||||||||||||||    
T  6560858 actcaaattattgggtgtaccatagaatttgtcttat 6560822  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 21605680 - 21605648
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttgtc 311  Q
    ||||||||| |||||||||||||||||||||||    
T  21605680 actcaaattgttgggtgtaccatagaatttgtc 21605648  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 309
Target Start/End: Complemental strand, 12801139 - 12801109
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttg 309  Q
    |||||||||||||||||||||||||||||||    
T  12801139 actcaaatttttgggtgtaccatagaatttg 12801109  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 40548058 - 40548092
Alignment:
Q  275 gtatactcaaatttttgggtgtaccatagaatttg 309  Q
    |||||||||||||||| ||||||||||||||||||    
T  40548058 gtatactcaaatttttaggtgtaccatagaatttg 40548092  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 309
Target Start/End: Complemental strand, 28090227 - 28090194
Alignment:
Q  276 tatactcaaatttttgggtgtaccatagaatttg 309  Q
    |||||||||||| |||||||||||||||||||||    
T  28090227 tatactcaaattattgggtgtaccatagaatttg 28090194  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 309
Target Start/End: Complemental strand, 7467152 - 7467122
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttg 309  Q
    |||||||||||||||||||||||||||||||    
T  7467152 actcaaatttttgggtgtaccatagaatttg 7467122  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 6884191 - 6884159
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttgtc 311  Q
    ||||||||| |||||||||||||||||||||||    
T  6884191 actcaaattgttgggtgtaccatagaatttgtc 6884159  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 45690874 - 45690902
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatt 307  Q
    |||||||||||||||||||||||||||||    
T  45690874 actcaaatttttgggtgtaccatagaatt 45690902  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 26011316 - 26011350
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttgtctt 313  Q
    |||||||||||||||||||||||| ||||||||||    
T  26011316 actcaaatttttgggtgtaccataaaatttgtctt 26011350  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 308
Target Start/End: Complemental strand, 47209078 - 47209049
Alignment:
Q  279 actcaaatttttgggtgtaccatagaattt 308  Q
    ||||||||||||||||||||||||||||||    
T  47209078 actcaaatttttgggtgtaccatagaattt 47209049  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 309
Target Start/End: Original strand, 30547141 - 30547169
Alignment:
Q  281 tcaaatttttgggtgtaccatagaatttg 309  Q
    |||||||||||||||||||||||||||||    
T  30547141 tcaaatttttgggtgtaccatagaatttg 30547169  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 51184074 - 51184042
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttgtc 311  Q
    |||||||| ||||||||||||||||||||||||    
T  51184074 actcaaatctttgggtgtaccatagaatttgtc 51184042  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 309
Target Start/End: Complemental strand, 2088903 - 2088870
Alignment:
Q  276 tatactcaaatttttgggtgtaccatagaatttg 309  Q
    |||||||||||||||| |||||||||||||||||    
T  2088903 tatactcaaatttttgagtgtaccatagaatttg 2088870  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 27800402 - 27800439
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttgtcttatc 316  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  27800402 actcaaatttttggatgtaccatagaatttgccttatc 27800439  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 31311447 - 31311386
Alignment:
Q  204 aaaataattctttttcttcnnnnnnncaagtcatttaattattaatttaacggtttggtgta 265  Q
    |||||||||||||||||||       ||| |||||||||||||||||||||| |||| ||||    
T  31311447 aaaataattctttttcttcaaaaaaacaactcatttaattattaatttaacgatttgatgta 31311386  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 308
Target Start/End: Original strand, 6975074 - 6975103
Alignment:
Q  279 actcaaatttttgggtgtaccatagaattt 308  Q
    ||||||||||||||||||||||||||||||    
T  6975074 actcaaatttttgggtgtaccatagaattt 6975103  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 1371441 - 1371405
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttgtcttat 315  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  1371441 actcaaatttttgagtgtgccatagaatttgtcttat 1371405  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 1379189 - 1379153
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttgtcttat 315  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  1379189 actcaaatttttgagtgtgccatagaatttgtcttat 1379153  T

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Target: scaffold0604 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 2052 - 2020
Alignment:
Q  279 actcaaatttttgggtgtaccatagaatttgtc 311  Q
    ||||||||||||| |||||||||||||||||||    
T  2052 actcaaatttttgagtgtaccatagaatttgtc 2020  T

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