View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17777_low_12 (Length: 428)

Name: NF17777_low_12
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17777_low_12
NF17777_low_12
[»] chr1 (4 HSPs)
chr1 (20-428)||(48105909-48106317)
chr1 (24-344)||(48062278-48062598)
chr1 (122-344)||(48099410-48099632)
chr1 (20-78)||(48066363-48066421)
[»] chr4 (1 HSPs)
chr4 (20-78)||(50231032-50231090)


Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Original strand, 48105909 - 48106317
Alignment:
Q  20 atctagacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgcaatcctatggcaaataatatttcagtagcttctccatattgc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48105909 atctagacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgcaatcctatggcaaataatatttcagtagcttctccagattgc 48106008  T
Q  120 ataatctcctcaagttttttgagatagttgggtgggctaacaactttatctccactatattcaatagtattatactcattcataaacaatgttgtttctg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48106009 ataatctcctcaagttttttgagatagttgggtgggctaacaactttatctccactatattcaatagtattatactcattcataaacaattttgtttctg 48106108  T
Q  220 gatcaagctcatgagcttttaaatagtataattcagatgcatttttacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatccca 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48106109 gatcaagctcatgagcttttaaatagtataattcagatgcattttcacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatccca 48106208  T
Q  320 tgcaatcaattctcctttataccttttaacaacagattcgattcnnnnnnncgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48106209 tgcaatcaattctcctttataccttttaacaacagattcgattctttttttcgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggt 48106308  T
Q  420 tgatatttt 428  Q
    |||||||||    
T  48106309 tgatatttt 48106317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 344
Target Start/End: Original strand, 48062278 - 48062598
Alignment:
Q  24 agacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgcaatcctatggcaaataatatttcagtagcttctccatattgcataa 123  Q
    |||||||||||||| || ||||  ||||||  |||||||| ||||||||  ||||| |||||||| ||| ||||| ||| |  | ||  | | |||  ||    
T  48062278 agacctgacctcatatatgcaatgtttggcacgccacttgaaaaatggcactgcaaccctatggccaatgatattccagcatttcctggaaactgctgaa 48062377  T
Q  124 tctcctcaagttttttgagatagttgggtgggctaacaactttatctccactatattcaatagtattatactcattcataaacaatgttgtttctgg-at 222  Q
    |||||| ||| ||   || ||| |||| ||||||  || | ||||| ||||| ||||| ||||| |||||||||||||| |||| ||||  || ||| ||    
T  48062378 tctccttaagcttccggatataattggttgggctggcatccttatcaccactgtattcgatagtgttatactcattcatgaaca-tgttcgttgtgggat 48062476  T
Q  223 caagctcatgagcttttaaatagtataattcagatgcatttttacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgc 322  Q
    |||| |  | ||||  | ||||||||| | |||| |||||||| || || ||||||||| ||||||| || |||||||| ||||| ||||| ||||||||    
T  48062477 caagatggtaagctgctgaatagtatactgcagaggcatttttgccgaggttgtcctcaaaaaagtggaagtggacattctcatttaccacgtcccatgc 48062576  T
Q  323 aatcaattctcctttatacctt 344  Q
    |||||||| |||||||||||||    
T  48062577 aatcaattgtcctttatacctt 48062598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 344
Target Start/End: Original strand, 48099410 - 48099632
Alignment:
Q  122 aatctcctcaagttttttgagatagttgggtgggctaacaactttatctccactatattcaatagtattatactcattcataaacaatgttgtttctgga 221  Q
    |||||||| ||||||  ||| ||| || |||||||| || ||   |||||||||  ||||||| || ||| |||||||||| |||| | |  ||||||||    
T  48099410 aatctccttaagtttcctgatataattaggtgggctgactacccgatctccacttgattcaatggtgttaaactcattcatgaacattttgatttctgga 48099509  T
Q  222 tcaagctcatgagcttttaaatagtataattcagatgcatttttacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatg 321  Q
    ||||| |  | |||| || |||| |||| |   || |||||||  || ||||||| |||| |||||||  | |||||||| |||||||| || |||||||    
T  48099510 tcaagatggtaagctgttgaataatatattggcgaggcattttcgccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatg 48099609  T
Q  322 caatcaattctcctttatacctt 344  Q
    |||||| || |||| ||||||||    
T  48099610 caatcagttgtcctctatacctt 48099632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 48066363 - 48066421
Alignment:
Q  20 atctagacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgca 78  Q
    ||||||||||||||||||||||||||  ||||||  ||| | || ||||||||||||||    
T  48066363 atctagacctgacctcatgtaagcaatgtttggcacgccgcgtgaaaaatggccttgca 48066421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 50231032 - 50231090
Alignment:
Q  20 atctagacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgca 78  Q
    ||||||||||||||||||||||||||  ||||||  ||| ||||  |||||||||||||    
T  50231032 atctagacctgacctcatgtaagcaatgtttggcatgccgcttgacaaatggccttgca 50231090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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