View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17777_low_14 (Length: 418)
Name: NF17777_low_14
Description: NF17777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17777_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 411
Target Start/End: Complemental strand, 44615206 - 44614810
Alignment:
| Q |
15 |
tcagttagcatatagtccttctcttgttttatcactttctcttaagagtgtaccgtaagaaatcatcagtagaaatctttgtgaatattttactcgtaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
44615206 |
tcagttagcatatagtccttctcttgttctatcactttctcttaagagtgtaccgtaagaaatcatcagtagaaatctttgtgaatatattactagtaac |
44615107 |
T |
|
| Q |
115 |
aaaggcataagtgggtgaataattgtgctaataaataatatttaagtcactgatgactcttataattctttgttatgtttggaggatttattacattatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44615106 |
aaaggcataagtgggtgaataattgtgctaataaagaatatttaagtcactgatgactcttataattctttgttatgtttggaggatttattacattatt |
44615007 |
T |
|
| Q |
215 |
aaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccata |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44615006 |
aaattgatagcagaagccataacaaaacacaatcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccata |
44614907 |
T |
|
| Q |
315 |
caaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgttatttattgatcctttgctactcct |
411 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
44614906 |
caaaaactctcaaaattgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgtcatttattgatcctttgctattcct |
44614810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 411
Target Start/End: Original strand, 44793363 - 44793759
Alignment:
| Q |
15 |
tcagttagcatatagtccttctcttgttttatcactttctcttaagagtgtaccgtaagaaatcatcagtagaaatctttgtgaatattttactcgtaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
44793363 |
tcagttagcatatagtccttctcttgttctatcactttctcttaagagtgtaccgtaagaaatcatcagtagaaatctttgtgaatatattactagtaac |
44793462 |
T |
|
| Q |
115 |
aaaggcataagtgggtgaataattgtgctaataaataatatttaagtcactgatgactcttataattctttgttatgtttggaggatttattacattatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44793463 |
aaaggcataagtgggtgaataattgtgctaataaagaatatttaagtcactgatgactcttaaaattctttgttatgtttggaggatttattacattatt |
44793562 |
T |
|
| Q |
215 |
aaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccata |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44793563 |
aaattgatagcagaagccataacaaaacacaatcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccata |
44793662 |
T |
|
| Q |
315 |
caaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgttatttattgatcctttgctactcct |
411 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
44793663 |
caaaaactctcaaaattgaaattgaaagccaaacaaaacacaatcaaacactaaagttttaacaaaaactgtcatttattgatcctttgctattcct |
44793759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 267 - 411
Target Start/End: Original strand, 44789760 - 44789904
Alignment:
| Q |
267 |
aaaattccatttattacattaataacatgatagcagaagatttccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
366 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
44789760 |
aaaaatccatttattacattaatcactcgatagcagaagattttcatacaaaaactgtcaaacttgaaattgaaagccaaacaaaacacaatcaaacact |
44789859 |
T |
|
| Q |
367 |
aaagttttaacaaaaactgttatttattgatcctttgctactcct |
411 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
44789860 |
aaagttttaacaaaaactgtcatttattgatcctttgctattcct |
44789904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 209 - 366
Target Start/End: Complemental strand, 44146980 - 44146823
Alignment:
| Q |
209 |
attattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatt |
308 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||| |||| ||| |||||||||| |
|
|
| T |
44146980 |
attattaactcgataacagaagccataacaaaacacagtcaagcactaaaattttaacaaaactccatctattacattattaactcgatggcagaagatt |
44146881 |
T |
|
| Q |
309 |
tccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
366 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
44146880 |
tccatacaaaaactgtcaaccttgaaattgaaagcagaaaaaaacacaatcaaacact |
44146823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 44783372 - 44783517
Alignment:
| Q |
221 |
atagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttattacattaataacatgatagcagaagatttccatacaaaaa |
320 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
44783372 |
atagcagaagccataacaaaacctagtcacacactaaagttttaacagaagtccatttattacattattaactcgatagcagaagatttcaatacaaaaa |
44783471 |
T |
|
| Q |
321 |
ctctcaaacttgaaattaaaagcctaacaaaacacaatcaaacact |
366 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||||| |
|
|
| T |
44783472 |
tcaccaaacttgaaattgaaagtagaaaaaaacacaatcaaacact |
44783517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 183 - 283
Target Start/End: Original strand, 44789646 - 44789743
Alignment:
| Q |
183 |
tttgttatgtttggaggatttattacattattaaattgatagcagaagccataacaaaacacagtcacacactaaagttttaacaaaattccatttatta |
282 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44789646 |
tttgttatgtttggaggatgtattacattattaaattga-agcagaagccataa--aagcacagtcacacactaaagttttaacaaaattccatttatta |
44789742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 300 - 411
Target Start/End: Original strand, 29505175 - 29505283
Alignment:
| Q |
300 |
cagaagatttccatacaaaaactctcaaacttgaaattaaaagcctaacaaaacacaatcaaacactaaagttttaacaaaaactgttatttattgatcc |
399 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||| ||| ||||||| |||| |
|
|
| T |
29505175 |
cagaagatttccatacaaaaactgtcaaacttgaaattgaaagcctaac-aaacacaataaaacactaaagtcttaacaaaa--tgtcatttattcatcc |
29505271 |
T |
|
| Q |
400 |
tttgctactcct |
411 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
29505272 |
tttcctattcct |
29505283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University